Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00492 ATGAAGATCCGTTGCGATGTTTGTGATCAAGCTGAGGCCTCTGTTTTTTGTTATGCTGATGAAGCTGCTCTTTGCCATGGTTGCGATCTCCATGTTCATCGCGCTAATAAGCTCGCTGGAAAACACTCTCGATTCTCTTTACTTCACCCTATCAAAAAGGATTCTCCTCGTTGCGATATCTGTCAGGAACGGCGCGCGCTTGTATTTTGTCAACAAGATAGGGCAATTCTTTGCAGAGAATGCGACATTTCGATTCACGAAGCGAACGAACATACACAGAAGCACAATCGATTTCTTCTTACGGGTGTGAAGCTTTCTTCGACTTGTTATTCGCATCAAACATCTTCGTCCTCCAATGGCTGTGATGCCGCCATGGATGTTAAAACTGGAAGCTCCAACGCTTGCAGCAAAAGACCTAAAATGGCGGCGAACGAAATCTCCAGCTCTCATTCCGCTGAAAAAGCTACTCCGTCGACAAGTAATTACAAGGTTGAAGACGGCCAAGCATTAAGCGACGGCGGTTCGTTCTCGACAAGCAGCATATCGGAATATTTAGAGACATTGCCGGGATGGTGCGTGGAGGAGTTTCTTGATCCTTCCGCCGCTGCCAATCGTTTCTGTAAGTTTAATGGCGAAATTGTTGGATTTGGGAATCAAAATCTGGAAAGGCAACAAGAATCACTAAGCACTCTCAAGAACACCTTCGAAATTTTAGGTAAAAATTCTCAAATTATTATTACTAGGTGTTGGAATGGAATACTTGGGATCTCCATGAAAACTTGTAAAGATGAAAAAATGCAACAGTGGGTGATCTGA 816 43.87 MKIRCDVCDQAEASVFCYADEAALCHGCDLHVHRANKLAGKHSRFSLLHPIKKDSPRCDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHNRFLLTGVKLSSTCYSHQTSSSSNGCDAAMDVKTGSSNACSKRPKMAANEISSSHSAEKATPSTSNYKVEDGQALSDGGSFSTSSISEYLETLPGWCVEEFLDPSAAANRFCKFNGEIVGFGNQNLERQQESLSTLKNTFEILGKNSQIIITRCWNGILGISMKTCKDEKMQQWVI 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4855440 4856716 - ClCG02G004670.1 Cla02g00492 266618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00492 271 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cla02g00492 271 Gene3D Classic Zinc Finger 1 100 - -
Cla02g00492 271 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 209 - -
Cla02g00492 271 CDD Bbox1_BBX-like 5 47 - -
Cla02g00492 271 MobiDBLite consensus disorder prediction 143 164 - -
Cla02g00492 271 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Cla02g00492 271 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Cla02g00492 271 SMART bboxneu5 53 100 IPR000315 GO:0008270
Cla02g00492 271 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cla02g00492 271 CDD Bbox1_BBX-like 58 100 - -
Cla02g00492 271 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 209 - -
Cla02g00492 271 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00492 Cla-Chr2:4855440 Cla09g01311 Cla-Chr9:20498015 2.79E-45 dispersed
Cla11g00377 Cla-Chr11:4256371 Cla02g00492 Cla-Chr2:4855440 9.25E-63 wgd
Cla02g00492 Cla-Chr2:4855440 Cla08g01445 Cla-Chr8:27322483 1.14E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60601 PF00643 zf-B_box 3.30E-07 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00492 - - bhj:120077848 490.73