Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00492 ATGAAGATCCGTTGCGATGTTTGTGATCAAGCTGAGGCCTCTGTTTTTTGTTATGCTGATGAAGCTGCTCTTTGCCATGGTTGCGATCTCCATGTTCATCGCGCTAATAAGCTCGCTGGAAAACACTCTCGATTCTCTTTACTTCACCCTATCAAAAAGGATTCTCCTCGTTGCGATATCTGTCAGGAACGGCGCGCGCTTGTATTTTGTCAACAAGATAGGGCAATTCTTTGCAGAGAATGCGACATTTCGATTCACGAAGCGAACGAACATACACAGAAGCACAATCGATTTCTTCTTACGGGTGTGAAGCTTTCTTCGACTTGTTATTCGCATCAAACATCTTCGTCCTCCAATGGCTGTGATGCCGCCATGGATGTTAAAACTGGAAGCTCCAACGCTTGCAGCAAAAGACCTAAAATGGCGGCGAACGAAATCTCCAGCTCTCATTCCGCTGAAAAAGCTACTCCGTCGACAAGTAATTACAAGGTTGAAGACGGCCAAGCATTAAGCGACGGCGGTTCGTTCTCGACAAGCAGCATATCGGAATATTTAGAGACATTGCCGGGATGGTGCGTGGAGGAGTTTCTTGATCCTTCCGCCGCTGCCAATCGTTTCTGTAAGTTTAATGGCGAAATTGTTGGATTTGGGAATCAAAATCTGGAAAGGCAACAAGAATCACTAAGCACTCTCAAGAACACCTTCGAAATTTTAGGTAAAAATTCTCAAATTATTATTACTAGGTGTTGGAATGGAATACTTGGGATCTCCATGAAAACTTGTAAAGATGAAAAAATGCAACAGTGGGTGATCTGA 816 43.87 MKIRCDVCDQAEASVFCYADEAALCHGCDLHVHRANKLAGKHSRFSLLHPIKKDSPRCDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHNRFLLTGVKLSSTCYSHQTSSSSNGCDAAMDVKTGSSNACSKRPKMAANEISSSHSAEKATPSTSNYKVEDGQALSDGGSFSTSSISEYLETLPGWCVEEFLDPSAAANRFCKFNGEIVGFGNQNLERQQESLSTLKNTFEILGKNSQIIITRCWNGILGISMKTCKDEKMQQWVI 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4855440 4856716 - ClCG02G004670.1 Cla02g00492 266618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00492 271 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cla02g00492 271 Gene3D Classic Zinc Finger 1 100 - -
Cla02g00492 271 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 209 - -
Cla02g00492 271 CDD Bbox1_BBX-like 5 47 - -
Cla02g00492 271 MobiDBLite consensus disorder prediction 143 164 - -
Cla02g00492 271 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Cla02g00492 271 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Cla02g00492 271 SMART bboxneu5 53 100 IPR000315 GO:0008270
Cla02g00492 271 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cla02g00492 271 CDD Bbox1_BBX-like 58 100 - -
Cla02g00492 271 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 209 - -
Cla02g00492 271 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00492 - - - bhj:120077848 490.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00492 Cla-Chr2:4855440 Cla09g01311 Cla-Chr9:20498015 2.79E-45 dispersed
Cla11g00377 Cla-Chr11:4256371 Cla02g00492 Cla-Chr2:4855440 9.25E-63 wgd
Cla02g00492 Cla-Chr2:4855440 Cla08g01445 Cla-Chr8:27322483 1.14E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g18 . . Bda06g00954 Bda08g00955 . . . Bma12g00543 . . . Cma20g00817 . Car20g00702 . Cpe04g00107 Cpe15g00559 . . . . . . . Cla02g00492 Cam02g0502 Cec02g0502 Cco02g0508 Clacu02g0505 Cmu02g0501 Cre02g0833 . . Cone3ag1218 Cone10ag1103 Lsi10g00408 Csa07g00027 Chy11g00343 Cme01g01353 Blo04g00532 . . Bda14g00574 Bpe15g00849 Bpe05g00323 . . Sed05g3539 . Cmo20g00825 . Cma19g00687 . . Cpe16g00269 . Bhi10g01956 Tan05g1250 Cmetu11g0516 . Hepe08g0983 . . . . . . . . . . Csa02g01300 . Cme11g00162
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g01382 . 37 368 C2C2-CO-like Transcription Factor Family AT5G15850 50.6 1.7e-41 167.2
Cla08g01382 . 32 368 C2C2-CO-like Transcription Factor Family AT5G24930 61.7 3.7e-84 308.9
Cla06g01299 CCT 20 374 C2C2-CO-like Transcription Factor Family AT5G24930 50.8 1.3e-57 220.7
Cla06g01299 CCT 1 374 C2C2-CO-like Transcription Factor Family AT5G57660 50.7 1.8e-67 253.4
Cla08g01382 . 33 368 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 5.1e-54 208.8
Cla02g00307 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 1.8e-89 326.6
Cla02g00307 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.8e-86 316.6
Cla02g00307 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.8e-86 316.6
Cla02g00492 . 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 54.7 8.4e-51 198.0
Cla11g00377 CCT,ECH 1 184 C2C2-CO-like Transcription Factor Family AT1G75540 52.5 8.4e-43 171.4
Cla07g00964 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.6 1.9e-76 283.1
Cla01g01962 . 1 107 C2C2-CO-like Transcription Factor Family AT2G21320 81.3 5.9e-48 187.6
Cla01g01962 . 1 114 C2C2-CO-like Transcription Factor Family AT4G38960 79.1 5.7e-49 191.0
Cla02g00492 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 60.4 8.3e-56 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60601 PF00643 zf-B_box 3.30E-07 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00492 Cla_Chr02 FPKM 37.199505 46.514355 57.151344 58.160156 27.716507 27.470778 29.894367 119.973663 126.17408 115.341591