Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla02g00492 | ATGAAGATCCGTTGCGATGTTTGTGATCAAGCTGAGGCCTCTGTTTTTTGTTATGCTGATGAAGCTGCTCTTTGCCATGGTTGCGATCTCCATGTTCATCGCGCTAATAAGCTCGCTGGAAAACACTCTCGATTCTCTTTACTTCACCCTATCAAAAAGGATTCTCCTCGTTGCGATATCTGTCAGGAACGGCGCGCGCTTGTATTTTGTCAACAAGATAGGGCAATTCTTTGCAGAGAATGCGACATTTCGATTCACGAAGCGAACGAACATACACAGAAGCACAATCGATTTCTTCTTACGGGTGTGAAGCTTTCTTCGACTTGTTATTCGCATCAAACATCTTCGTCCTCCAATGGCTGTGATGCCGCCATGGATGTTAAAACTGGAAGCTCCAACGCTTGCAGCAAAAGACCTAAAATGGCGGCGAACGAAATCTCCAGCTCTCATTCCGCTGAAAAAGCTACTCCGTCGACAAGTAATTACAAGGTTGAAGACGGCCAAGCATTAAGCGACGGCGGTTCGTTCTCGACAAGCAGCATATCGGAATATTTAGAGACATTGCCGGGATGGTGCGTGGAGGAGTTTCTTGATCCTTCCGCCGCTGCCAATCGTTTCTGTAAGTTTAATGGCGAAATTGTTGGATTTGGGAATCAAAATCTGGAAAGGCAACAAGAATCACTAAGCACTCTCAAGAACACCTTCGAAATTTTAGGTAAAAATTCTCAAATTATTATTACTAGGTGTTGGAATGGAATACTTGGGATCTCCATGAAAACTTGTAAAGATGAAAAAATGCAACAGTGGGTGATCTGA | 816 | 43.87 | MKIRCDVCDQAEASVFCYADEAALCHGCDLHVHRANKLAGKHSRFSLLHPIKKDSPRCDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHNRFLLTGVKLSSTCYSHQTSSSSNGCDAAMDVKTGSSNACSKRPKMAANEISSSHSAEKATPSTSNYKVEDGQALSDGGSFSTSSISEYLETLPGWCVEEFLDPSAAANRFCKFNGEIVGFGNQNLERQQESLSTLKNTFEILGKNSQIIITRCWNGILGISMKTCKDEKMQQWVI | 271 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4855440 | 4856716 | - | ClCG02G004670.1 | Cla02g00492 | 266618 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla02g00492 | 271 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
Cla02g00492 | 271 | Gene3D | Classic Zinc Finger | 1 | 100 | - | - | |
Cla02g00492 | 271 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 209 | - | - | |
Cla02g00492 | 271 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
Cla02g00492 | 271 | MobiDBLite | consensus disorder prediction | 143 | 164 | - | - | |
Cla02g00492 | 271 | Pfam | B-box zinc finger | 3 | 44 | IPR000315 | GO:0008270 | |
Cla02g00492 | 271 | Pfam | B-box zinc finger | 55 | 92 | IPR000315 | GO:0008270 | |
Cla02g00492 | 271 | SMART | bboxneu5 | 53 | 100 | IPR000315 | GO:0008270 | |
Cla02g00492 | 271 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
Cla02g00492 | 271 | CDD | Bbox1_BBX-like | 58 | 100 | - | - | |
Cla02g00492 | 271 | PANTHER | B-BOX ZINC FINGER PROTEIN 20 | 1 | 209 | - | - | |
Cla02g00492 | 271 | ProSiteProfiles | Zinc finger B-box type profile. | 53 | 100 | IPR000315 | GO:0008270 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g00492 | Cla-Chr2:4855440 | Cla09g01311 | Cla-Chr9:20498015 | 2.79E-45 | dispersed | |
Cla11g00377 | Cla-Chr11:4256371 | Cla02g00492 | Cla-Chr2:4855440 | 9.25E-63 | wgd | |
Cla02g00492 | Cla-Chr2:4855440 | Cla08g01445 | Cla-Chr8:27322483 | 1.14E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60601 | PF00643 | zf-B_box | 3.30E-07 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla02g00492 | - | - | bhj:120077848 | 490.73 |