Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla02g00495 | ATGGCGTCCGATTCCTCTCCAGTTAACTTCAATACAGGTCCTTCGTCGCCTGATGATTCATTCTCTAGTCCCATTGGAAACACCGTCTCCTCCTCTGGGGACGGTTATCGCCGTCGAAGCCATCGTCGGTCATCTACTCCTTCGGAAATGGCTACGCCGCCGCGTCAACGAGCCCGAATGGTCTCGTCCGAAACCACACCGACGGCTAAGGAACCGCGCTCGCGCCGGCGAGGTGGTGGGCGGAGAGCGTCGGGTAGTGAAGCGCCTCCGGTGGCTGCTACACCTTCTTCGACGGATGATATTCCGCCATCGACGGAACCTGGCGACGGCGATGACATGGATGAGGACCATCCGACTTTTGTATGGGGGACGAATATTAGTGTTGACGATGTAAAGGGAGCTATTATTCGGTTTTTGAGGCATTTCCGCGATCGTCAGGCGTCGCAGTCTGAGGGGGATTTTCATACTGAGGGAAAATACGCGGAGGTAATCAAGCGGGTTCTTGAAATTGAAGGGGATTCGCTCGATGTGGATGCGCAGGATTTGTTCAATTACGATACGGATTTATACACGAAGATGGTGAGGTACCCTCTCGAGGTTCTCGCAATTTTTGATATCGTTCTGATGGAAATGGTGCCCCAAATCAACCCATTGTTCGAAAAACACATTCAAACTCGGATATTCAATCTCAAAACTTCTACTTCAATGAGAAATCTTAACCCATCTGACATTGAGAGGATGGTATCACTGAAGGGAATGATTATACGGTGTAGTTCGATAATTCCTGAGATCAGGGAGGCGATATTTAGATGTCTCGTATGTGGATACTACACTGACCCTGTAGCTATTGAGAGAGGACGAATAACTGAGCCCACTATATGCTTGAAGGAAGAATGCCAAGCAAGGAACTCCATGACATTGGTTCACAATCGATGCAGGTTTGCTGATAAGCAGATTGTGCGGCTTCAGGAGACTCCTGATGAGATACCTGAAGGAGGGACGCCTCATACTGTAAGCTTGCTAATGCATGACAGGCTGGTTGATACTGGAAAGCCTGGTGACAGGGTTGAGGTCACTGGGATTTACAGGGCTATGAGTGTGAGAGTTGGACCAACCCAGAGAACTGTAAAATCACTGTTCAAGACTTATATCGACTGTCTTCATATAAAGAAGACTGATAAATCAAGAATGGTGGCAGAAGACCTGACTGAAGCTGAGAACCGGTTGGGTGGAAATGTGGATGATCTCTCATTTGATGAAGCAAAGGTGGAAAAGTTGAAAGAACTCTCCAAAAAGCCTGATATATATGACAGACTGACCAGATCATTGGCTCCTAATATTTGGGAGCTTGATGATGTAAAGAAGGGCCTTCTTTGCCAGCTCTTTGGTGGGAATGCTTTGAAATTGGCATCTGGTGCAAGCTTTCGTGGGGATATTAACATACTTCTTGTTGGTGATCCTGGAACCAGCAAATCTCAGCTTCTCCAATACATACATAAACTATCTCCCCGTGGCATTTACACCAGTGGAAGGGGTAGCTCTGCTGTTGGTTTGACAGCTTATGTCACCAAAGATCCTGAAACAGGGGAAACGGTACTGGAGAGCGGAGCCTTGGTTTTGAGTGACAGGGGCATATGTTGCATTGATGAATTTGATAAAATGTCTGAAAATGCAAGGAGCATGTTGCACGAGGTGATGGAGCAACAAACTGTTTCAATAGCAAAGGCTGGAATTATTGCTTCCCTTAATGCCAGGACTTCAGTATTAGCTTGTGCAAATCCTAGTGGTTCACGTTATAACCCTCGCCTGTCTGTGATTGATAACATACACCTTCCTCCTACTTTGTTATCAAGGTTTGACTTGATTTATTTAATTCTGGATAAAGCTGATGAGCAAACAGATAGGCGCCTTGCTAAGCATATTGTCTCACTACACTTTGACAACCCAGAGGGCATTGAGCAGGATTTCTTGGACCTGCATACCTTGACTTCGTATGTCAGCTATGCTAGGAAAAATATTCACCCAAAATTGTCAGACGAAGCAGCTGAAGAGTTGACTAGAGGCTATGTTGAGCTGAGGAGGAGAGGAAACTTTCCAGGCAGTAGTAAAAAGGTGATTACAGCTACCCCCAGACAGATAGAGAGTTTAATACGTCTAAGCGAAGCCCTTGCTCGAATCCGTTTCTCAGAATGGGTTGAAAAGGGTGACGTTCTCGAGTCATTCCGGCTTCTAGAAGTTGCAATGCAACAATCTGCAACAGATCATTCTACAGGAACTATTGACATGGATCTGATCACCACGGGAGTATCGGCAAGTGAAAGGATGCGAAGGGAGAGTTTATTATCGGCAACTCGCAACATTATTATGGAGAAAATGCAGCTGGGAGGACCCTCCATGCGCCTGGCAGAGTTGCTGGATGAGCTGAAGAAGAAAAATCCTGACAATGAAGTCCATCTCAACAACCTTAGAAACGCGGTATCAACACTTGCAAGTGAGGGATTTGTAGCGATCCATGGTGATAACGTAAAGAGAATATGA | 2538 | 46.22 | MASDSSPVNFNTGPSSPDDSFSSPIGNTVSSSGDGYRRRSHRRSSTPSEMATPPRQRARMVSSETTPTAKEPRSRRRGGGRRASGSEAPPVAATPSSTDDIPPSTEPGDGDDMDEDHPTFVWGTNISVDDVKGAIIRFLRHFRDRQASQSEGDFHTEGKYAEVIKRVLEIEGDSLDVDAQDLFNYDTDLYTKMVRYPLEVLAIFDIVLMEMVPQINPLFEKHIQTRIFNLKTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGYYTDPVAIERGRITEPTICLKEECQARNSMTLVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDRLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKSRMVAEDLTEAENRLGGNVDDLSFDEAKVEKLKELSKKPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFDNPEGIEQDFLDLHTLTSYVSYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKGDVLESFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLLSATRNIIMEKMQLGGPSMRLAELLDELKKKNPDNEVHLNNLRNAVSTLASEGFVAIHGDNVKRI | 845 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 4896804 | 4902122 | + | ClCG02G004700.1 | Cla02g00495 | 266621 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla02g00495 | 845 | Pfam | MCM N-terminal domain | 134 | 232 | IPR027925 | - | |
| Cla02g00495 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 258 | 271 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cla02g00495 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 309 | 321 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cla02g00495 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 451 | 462 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cla02g00495 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 597 | 614 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cla02g00495 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 749 | 758 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cla02g00495 | 845 | ProSiteProfiles | MCM family domain profile. | 435 | 641 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla02g00495 | 845 | Pfam | MCM OB domain | 236 | 365 | IPR033762 | - | |
| Cla02g00495 | 845 | Gene3D | - | 263 | 315 | - | - | |
| Cla02g00495 | 845 | Gene3D | - | 125 | 230 | - | - | |
| Cla02g00495 | 845 | Gene3D | - | 413 | 753 | IPR027417 | - | |
| Cla02g00495 | 845 | MobiDBLite | consensus disorder prediction | 46 | 68 | - | - | |
| Cla02g00495 | 845 | SUPERFAMILY | Nucleic acid-binding proteins | 152 | 386 | IPR012340 | - | |
| Cla02g00495 | 845 | Gene3D | - | 754 | 836 | IPR036388 | - | |
| Cla02g00495 | 845 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 92 | 844 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla02g00495 | 845 | Pfam | MCM P-loop domain | 423 | 645 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla02g00495 | 845 | Pfam | MCM AAA-lid domain | 661 | 747 | IPR041562 | - | |
| Cla02g00495 | 845 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 446 | 761 | IPR027417 | - | |
| Cla02g00495 | 845 | SMART | mcm | 232 | 749 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla02g00495 | 845 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM4 | 92 | 844 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cla02g00495 | 845 | ProSitePatterns | MCM family signature. | 544 | 552 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Cla02g00495 | 845 | Gene3D | - | 236 | 375 | IPR012340 | - | |
| Cla02g00495 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 476 | 491 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla02g00495 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 536 | 550 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla02g00495 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 564 | 577 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla02g00495 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 588 | 600 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla02g00495 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 615 | 623 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla02g00495 | 845 | MobiDBLite | consensus disorder prediction | 1 | 118 | - | - | |
| Cla02g00495 | 845 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Cla02g00495 | 845 | CDD | MCM4 | 438 | 747 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g02533 | Cla-Chr1:38971495 | Cla02g00495 | Cla-Chr2:4896804 | 2.91E-113 | dispersed | |
| Cla02g00495 | Cla-Chr2:4896804 | Cla09g00472 | Cla-Chr9:4509210 | 2.43E-115 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla02g00495 | K02212 | - | csv:101211850 | 1588.93 |