Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00499 ATGAGTGTTGTGGGGTTTTCTTGTTCTTCTTCTTTTGTTGTGCTTATTGCTGTTTTGGCTCTGGTTTTGAATGGAGTTGAGGTATGTTATGGAGGTAAAACAAGCCAGTTTCTGAGGAAGGTTGAGAAAACTGTGGATATGCCTCTTGACAGTGATGTTTTTGCTGTTCCTCCTGGTTATAATGCTCCCCAGCAGGTTCATATCACACAAGGAGATCATGAAGGGAAGGCAGTGATTGTTTCATGGGTCACTCCAAATAAACCAGGATCAAATAAAGTATTGTATTGGAGTGAGAAAAGCAAGCAAAAGAAACAGACCTTTGGGAAAGTATATACTTACAAGTTCTATAATTACACTTCTGGCTACATTCATCATTGCACCATTGACAACTTAAAGTACAACACCAAATACTACTATGAAGTGGGAATCGGGTACTCTCCAAGAACATTCTGGTTCGTCACTCCTCCAGAAGTCGGTCCCGATGTCCCCTATACATTTGGTCTCATAGGGGATCTTGGCCAGAGTTTTGATTCAAATATAACGCTGACACATTACGAACGAAACCCGCACAAAGGAAAAACAGTGTTATTTGTAGGGGATCTATCTTATGCTGATAATTATCCATTCCATGACAATGTAAGGTGGGATACATGGGGAAGATTTGCTGAGAGAAGTGTCGCCTATCAGCCTTGGATATGGACTGCAGGAAATCATGAAATTGATTTTGTCCCAGAAATTGGCGAGACCGAGCCTTTCAAGCCGTTTTCTAACCGATATCATGTCCCTTATAAAGCATCCGAGAGCACAGCTCCTTTTTGGTACTCAATCAAGAGAGGTCCAGCATACATCATAGTCTTGGCTTCATATTCAGCTTATGGTAAATACACTCCTCAATACAAATGGCTTGAAGCGGAGCTACCAAAAGTTAACAGAAGCGAAACACCATGGTTGATTGTTCTTATGCATTCCCCATGGTACAACAGCTACAACTATCATTACATGGAAGGAGAAACTATGCGAGTAATGTATGAGCCATGGTTTGTACAATACAAAGTTGACGTTGTCTTTGCTGGCCATGTCCATGCTTACGAAAGATCTGAAAGAATTTCAAATATTGCATACAACATTGTGAATGGCCACTGTATTCCAGTTAAAGATCAATCTGCACCTGTATACATAACAATAGGTGATGGAGGAAACCTTGAAGGCCTAGCAACCAATATGACGGAGCCACAGCCTGCGTACTCGGCGTATCGTGAAGCGAGCTTTGGCCATGGCATATTCGATATAAAGAACAGAACTCATGCATATTTCAGTTGGAACAGGAATCAAGATGGATATGCAGTTGAAGCTGATACTCTTTGGTTCTTCAACAGACACTGGTACCCGGTCGACGAGTCGTTAAGTGAGCGAAAATGA 1419 41.65 MSVVGFSCSSSFVVLIAVLALVLNGVEVCYGGKTSQFLRKVEKTVDMPLDSDVFAVPPGYNAPQQVHITQGDHEGKAVIVSWVTPNKPGSNKVLYWSEKSKQKKQTFGKVYTYKFYNYTSGYIHHCTIDNLKYNTKYYYEVGIGYSPRTFWFVTPPEVGPDVPYTFGLIGDLGQSFDSNITLTHYERNPHKGKTVLFVGDLSYADNYPFHDNVRWDTWGRFAERSVAYQPWIWTAGNHEIDFVPEIGETEPFKPFSNRYHVPYKASESTAPFWYSIKRGPAYIIVLASYSAYGKYTPQYKWLEAELPKVNRSETPWLIVLMHSPWYNSYNYHYMEGETMRVMYEPWFVQYKVDVVFAGHVHAYERSERISNIAYNIVNGHCIPVKDQSAPVYITIGDGGNLEGLATNMTEPQPAYSAYREASFGHGIFDIKNRTHAYFSWNRNQDGYAVEADTLWFFNRHWYPVDESLSERK 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4932405 4936016 + ClCG02G004740.1 Cla02g00499 266625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00499 472 ProSiteProfiles Fibronectin type-III domain profile. 62 157 IPR003961 GO:0005515
Cla02g00499 472 PANTHER PURPLE ACID PHOSPHATASE 9 470 - -
Cla02g00499 472 Pfam Purple acid Phosphatase, N-terminal domain 63 145 IPR015914 GO:0003993|GO:0046872
Cla02g00499 472 SUPERFAMILY Purple acid phosphatase, N-terminal domain 44 156 IPR008963 GO:0003993|GO:0046872
Cla02g00499 472 CDD MPP_PAPs 160 458 IPR041792 -
Cla02g00499 472 Pfam Calcineurin-like phosphoesterase 165 363 IPR004843 GO:0016787
Cla02g00499 472 CDD FN3 61 147 IPR003961 GO:0005515
Cla02g00499 472 Gene3D - 159 468 IPR029052 -
Cla02g00499 472 SUPERFAMILY Metallo-dependent phosphatases 160 466 IPR029052 -
Cla02g00499 472 Pfam Iron/zinc purple acid phosphatase-like protein C 389 448 IPR025733 -
Cla02g00499 472 Gene3D - 62 158 - -
Cla02g00499 472 PANTHER ACID PHOSPHATASE RELATED 9 470 IPR039331 GO:0003993
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00499 K22390 ACP7; acid phosphatase type 7 - csv:101211612 941.028
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01950 Cla-Chr1:34162905 Cla02g00499 Cla-Chr2:4932405 0 dispersed
Cla02g00499 Cla-Chr2:4932405 Cla04g00983 Cla-Chr4:24950234 9.50E-87 dispersed
Cla05g00371 Cla-Chr5:3373741 Cla02g00499 Cla-Chr2:4932405 1.33E-58 transposed
Cla06g00762 Cla-Chr6:10143849 Cla02g00499 Cla-Chr2:4932405 5.76E-65 transposed
Cla06g01157 Cla-Chr6:24648768 Cla02g00499 Cla-Chr2:4932405 0 transposed
Cla06g01740 Cla-Chr6:30947760 Cla02g00499 Cla-Chr2:4932405 3.07E-19 transposed
Cla02g00499 Cla-Chr2:4932405 Cla08g01452 Cla-Chr8:27425765 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g11 . . . . . . . . . . . . . . . Cpe04g00114 . . . . . . . . Cla02g00499 Cam02g0509 Cec02g0509 Cco02g0515 Clacu02g0511 Cmu02g0507 Cre02g0840 . . . . . . . Cme01g01364 Blo04g00527 . . Bda14g00570 . . Bma03g00564 . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01126 . Chy01g00759 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000712 2 3 4 4 1 3 4 3 3 3 3 3 3 3 3 3 3 5 4 3 4 3 3 3 3 3 3 4 3 5 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00499 Cla_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0