Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00500 ATGGGGAAGAACAAGAAACATAAGGACGGCGGCGAGAAGGGAGCCGCCGCCGGCGACCACTGCCCTTCCAAGGTCTTCGTCAAGAACTTGCCGTACTCGTTCACCAACTCACAGCTTGAAGAAACATTCAGTGATGTTGGTCCGGTCCGGCGGTGCTTCATGGTTACTCAAAAGGGTTCAACTGAGCATTGCGGTTTTGGATTCGTGCAGTTTGCTGTAGCTGAAGATGCAAATCGAGCAATTGAGCTGAAGAATGGGATGTCTGTTGAAGGACGCAAAATTACTGTTAAACATGCTATGCATCGAGCTCCCCTTGAGCAGCGGCGGTCTAAAGAAAATCAAGCTACTGCATCTAAGTCAACAATTAACGAGGAAGGAGATACTTCTAAAAGGGAAGAGCAAACAATTAACGAGGATAGAGATACTTCTAAAAGGGAAGAACAAACAACTAATGAGGATAGAGATACTTCTGAAAAGGCAGAACAAACAACTTCAAATTCCGAGGGGAAAGAGAGACATTTGAATGCTCGGAAATTAGCTTCACTTTCTAGTTATCTAGAGGATAAAGAGGGTCATTCAGGAAAGCAAAGGATTGCCAGGACTGTTGTATTCGGTGGTCTTCTTAATGCTGACATGGCTGAAGATGTTCACCGCCAAGCAAGAGATGTTGGCGACATATGCTCTATTGTTTATCCTCTTCCCAGAAAAGAAGTTGAACAACATGGTCTTTTACGAGATGGATGCAAAATGGATGTTTCAGCTGTACTTTTTGCTAGTGTGAAGTCTGCACGTGCTGCTGTTACCATATTACACCAGAAAGAGATGAAAGGAGGTGTTGTATGGGCCCGACAACTGGGTGGAGAGCTTTTAAATATTGGAAGAAGTGACCTCCTGATCGGCTATAAGATTGTGGAGGACAGATTTGCGTTCACTGGAAGATCCAAGTTCCGTCTTTTGTTGTCCCTTATGGAACTTGGTCCAAAGGGGTCCAAAACTCAGAAATGGAAAGTTATTGTTAGAAATCTTCCATTTAAGGCCAAGGAGAAAGAAATAAAGGATACCTTTTCATCTGCAGGATTTGTGTGGGATGTGATGATGCCACATAGTTCAGACACAGGATTATCAAAGGGGTTTGCGTTTGTCAAATTTACATGCAAACAGGATGCTGAGAGTGCTATTAAAAAGTTCAATGGTCAAAAATTTGGTCAAAGGACGATAGCTGTGGACTGGGCTGTTCCAAAGAAGATATATAGCTCGGGTGCTAGTGCTCCAGTTGATTCAGATGACGGGGAACAGACTGAAAGAGACAGAGAAGGTAGCATTAGTAGTGATGATTTCGAAGCTGAAAATACTGCTGTTCATGAGAAATCTCAGTGCTCCAACAAAGATGAAAGTTCTTCAGAGGATTCGGAGAAAGAAGATATTTCCTCGGAGGTTAATTTTGAAGGAGAAGCAGAAATGGCAAGAAAAGTTCTTGAAAATCTAATTTCATCTTCGGCTAAAGAGGCTCTTCCTTCTCCCATTGATGGTAACCCACCATCTAAAGTGAACAAGGAGCCAGATTTTGATTCGTCCAAGAAGTCATCTGATGTGTCTGATAAAGTATCAAATGAACCTGGAAAGTTAAATGAAAGCAAAACATCTATTCTTAAGCAAACAGATGAAGATGATTTGAAGAGAACTGTTTATATAGGCAATCTTCCTTTTGATATTGATAATGAAGAAGTGAAACAGCGGTTTTCTGGATTTGGTGAAGTGCTATCCTTTGTGCCAGTCCTTCATCAGGTTACAAAGCGACCTAAAGGCACTGGTTTTCTCAAGTTTAAAACGGTCAATGCTGCTACTGCTGCTGTTTCTTCTGCAAATGTTGCATCTGGTGTGGGAATATTTCTGAAAGGCAGGCAACTGAAAGTATTGAATGCCCTGGATAGAAAATCAGCTCATGACAAGGAATTGGAAAAGTCCAAAAATGACAATCATGACCACCGGAATCTTTATCTTGCACAGGAAGGTATTATTCTCGAGGGAACTCCAGCTGCTGAGGGAGTTTCTGCTAGTGATATGGAGAAACGTCAAAGGCTGGAAAAGAAAAGAACGACCAAGCTTCAATCTCCAAATTTTCATGTTTCAAGGACTAGGCTCGTTATACACAATTTACCAAAATCAATGAAAGAAAAAGAACTTCAAAAACTTTGCATTGAAGCAGTTACCTCACGAGCTACAAAACAAAAACCCGTGATTCGACAGATTAAGTTCTTAAAGGATGTGAAGAAAGGAAAGCTACTGACAAAAAATCACTCCTGTGGAGTCGCTTTCGTTGAGTTTTCTGAGCATGAGCACGCCCTTGTAGCCCTGCGAGTTCTCAACAACAATCCAGAAACTTTTGGCCCTATAAATCGCCCGATCGTAGAGTTTGCTATTGACAATGTTCAAACGTTGAAGTTGCGTAAAGCAAAGTTACAAGCTTGGTCACAGGACAATACAGCCAATGTTCCCAAAGCCTGGCAAGGGAATGCGAATACTGATACAATTGCTGGGGATGTCCATTCAAACAAGAACAATTCCAGAAAAAGGAAAGCAATGGGTGATAATCGTCCGGTGCGCAACAAAGATGAAAATGACAATCATGTGTCCAATGATGTGGCGATGGAAGAAAATAGAGCTATAAAAAAGAGGAAAACACGTCCAGAAATCGGTAATACAAACAAGTCGCTGAGACAAAAACCAGAAGGACGAAGATCAATGCCTGAAAAATCGATCAACAGATCGGTATCCATGGATTCTGGAAAAATAAAAGCTTCTCAGGAAGCTGATGTACAACACAAAAAGAAGGTAAAACATCAAGTAGAGCAGCAGAGGAAGAGGCCAAAGAAAAACAAGGAACCAATAGGGCGGGATGTTGTCGATAAACTCGACGTGCTTATTGAACAATATCGATCCAAGTTCTTGCAGCAGAGGTCAGACCGAACAGATGGTGAAAAGAAAGGCTCTAAACAGGGCTCCCTTTTGATGGCCAAACCCAAGGCTCCGAGGCAAACCCTAGATTCTTACACTGTCAAACGCATCAACAAAACCATTAAAGCCGGCGATTGCGTGCTTATGAGGCCCTCCGAACCCTCGAAACCTTCGTATGTTGCTAAGATTGAGAAGATTGAGGCTGATTCTCGTGGGGCCAATGTGAAGGTCCATGTTCGCTGGTATTACCGGCCGGAGGAATCAATTGGCGGTCGGAGACAGTTTCATGGCTCGAAGGAGCTGTTTCTCTCCGACCATTATGACGTTCAAAGCGCCGACACTATCGAGGGAAAGTGTACGGTGCATACGTTTAAGAATTATACCAAGCTTGATGCCGTTGGAAATGATGATTATTTTTGCCGTTTCGACTATAATTCCACTACTGGAGCTTTCAATCCCGATCGAGTGGCTGTGTATTGCAAGTGTGAGATGCCTTATAATCCCGATGACCTAATGGTTCAGTGCGAGAGCTGCAGTGACTGGTTCCATCCTGCTTGTATAGAAATGACTGCAGAAGAAGCTAAAAAACTTGACCACTTCTTCTGTGAAAGTTGTTCTTCAGAGGGTCAAAAGAAGTTGCAGAATTCACAGGCTACATCTAAAGTTGCAGAGACTAAGGTATTTCTTCCTCATTTGGTTGGTAGTGTAGATAGCATTAGGTGGATACAAAACGACGCCGGAGGTGACGATAGTGTAAATAAACAAAAATACGGTGACTTAGAGTCGTTAAGAACCAACCAGAGCTTCTAA 3765 42.55 MGKNKKHKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHCGFGFVQFAVAEDANRAIELKNGMSVEGRKITVKHAMHRAPLEQRRSKENQATASKSTINEEGDTSKREEQTINEDRDTSKREEQTTNEDRDTSEKAEQTTSNSEGKERHLNARKLASLSSYLEDKEGHSGKQRIARTVVFGGLLNADMAEDVHRQARDVGDICSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMKGGVVWARQLGGELLNIGRSDLLIGYKIVEDRFAFTGRSKFRLLLSLMELGPKGSKTQKWKVIVRNLPFKAKEKEIKDTFSSAGFVWDVMMPHSSDTGLSKGFAFVKFTCKQDAESAIKKFNGQKFGQRTIAVDWAVPKKIYSSGASAPVDSDDGEQTERDREGSISSDDFEAENTAVHEKSQCSNKDESSSEDSEKEDISSEVNFEGEAEMARKVLENLISSSAKEALPSPIDGNPPSKVNKEPDFDSSKKSSDVSDKVSNEPGKLNESKTSILKQTDEDDLKRTVYIGNLPFDIDNEEVKQRFSGFGEVLSFVPVLHQVTKRPKGTGFLKFKTVNAATAAVSSANVASGVGIFLKGRQLKVLNALDRKSAHDKELEKSKNDNHDHRNLYLAQEGIILEGTPAAEGVSASDMEKRQRLEKKRTTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKPVIRQIKFLKDVKKGKLLTKNHSCGVAFVEFSEHEHALVALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSQDNTANVPKAWQGNANTDTIAGDVHSNKNNSRKRKAMGDNRPVRNKDENDNHVSNDVAMEENRAIKKRKTRPEIGNTNKSLRQKPEGRRSMPEKSINRSVSMDSGKIKASQEADVQHKKKVKHQVEQQRKRPKKNKEPIGRDVVDKLDVLIEQYRSKFLQQRSDRTDGEKKGSKQGSLLMAKPKAPRQTLDSYTVKRINKTIKAGDCVLMRPSEPSKPSYVAKIEKIEADSRGANVKVHVRWYYRPEESIGGRRQFHGSKELFLSDHYDVQSADTIEGKCTVHTFKNYTKLDAVGNDDYFCRFDYNSTTGAFNPDRVAVYCKCEMPYNPDDLMVQCESCSDWFHPACIEMTAEEAKKLDHFFCESCSSEGQKKLQNSQATSKVAETKVFLPHLVGSVDSIRWIQNDAGGDDSVNKQKYGDLESLRTNQSF 1254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4938454 4961771 - ClCG02G004750.2 Cla02g00500 266626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00500 1254 MobiDBLite consensus disorder prediction 100 175 - -
Cla02g00500 1254 ProSitePatterns Zinc finger PHD-type signature. 1145 1190 IPR019786 -
Cla02g00500 1254 SUPERFAMILY FYVE/PHD zinc finger 1134 1196 IPR011011 -
Cla02g00500 1254 CDD RRM3_RBM28_like 560 641 - -
Cla02g00500 1254 SUPERFAMILY RNA-binding domain, RBD 560 790 IPR035979 GO:0003676
Cla02g00500 1254 MobiDBLite consensus disorder prediction 124 175 - -
Cla02g00500 1254 Gene3D - 2 116 IPR012677 -
Cla02g00500 1254 SMART PHD_3 1144 1191 IPR001965 -
Cla02g00500 1254 ProSiteProfiles BAH domain profile. 1024 1140 IPR001025 GO:0003682
Cla02g00500 1254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 560 643 IPR000504 GO:0003723
Cla02g00500 1254 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 6 460 - -
Cla02g00500 1254 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 554 818 - -
Cla02g00500 1254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1137 1208 IPR013083 -
Cla02g00500 1254 PANTHER RNA BINDING PROTEIN 6 460 - -
Cla02g00500 1254 PANTHER RNA BINDING PROTEIN 554 818 - -
Cla02g00500 1254 MobiDBLite consensus disorder prediction 419 481 - -
Cla02g00500 1254 SMART BAH_4 1024 1140 IPR001025 GO:0003682
Cla02g00500 1254 Gene3D - 711 806 IPR012677 -
Cla02g00500 1254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 335 413 IPR000504 GO:0003723
Cla02g00500 1254 MobiDBLite consensus disorder prediction 519 540 - -
Cla02g00500 1254 SMART rrm1_1 336 409 IPR000504 GO:0003723
Cla02g00500 1254 SMART rrm1_1 561 639 IPR000504 GO:0003723
Cla02g00500 1254 SMART rrm1_1 713 804 IPR000504 GO:0003723
Cla02g00500 1254 SMART rrm1_1 24 97 IPR000504 GO:0003723
Cla02g00500 1254 CDD RRM4_RBM28_like 712 809 - -
Cla02g00500 1254 ProSiteProfiles Zinc finger PHD-type profile. 1142 1193 IPR019787 -
Cla02g00500 1254 MobiDBLite consensus disorder prediction 1 20 - -
Cla02g00500 1254 MobiDBLite consensus disorder prediction 1 15 - -
Cla02g00500 1254 CDD BAH_BAHCC1 1025 1160 - -
Cla02g00500 1254 SUPERFAMILY RNA-binding domain, RBD 23 281 IPR035979 GO:0003676
Cla02g00500 1254 MobiDBLite consensus disorder prediction 831 965 - -
Cla02g00500 1254 Gene3D - 536 661 IPR012677 -
Cla02g00500 1254 Pfam BAH domain 1025 1139 IPR001025 GO:0003682
Cla02g00500 1254 CDD RRM2_RBM28_like 336 412 - -
Cla02g00500 1254 Pfam PHD-finger 1144 1192 IPR019787 -
Cla02g00500 1254 Gene3D - 986 1136 IPR043151 -
Cla02g00500 1254 MobiDBLite consensus disorder prediction 851 899 - -
Cla02g00500 1254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 101 IPR000504 GO:0003723
Cla02g00500 1254 MobiDBLite consensus disorder prediction 428 481 - -
Cla02g00500 1254 MobiDBLite consensus disorder prediction 831 850 - -
Cla02g00500 1254 MobiDBLite consensus disorder prediction 502 546 - -
Cla02g00500 1254 MobiDBLite consensus disorder prediction 984 1013 - -
Cla02g00500 1254 CDD RRM1_RBM28_like 25 102 - -
Cla02g00500 1254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 712 820 IPR000504 GO:0003723
Cla02g00500 1254 SUPERFAMILY RNA-binding domain, RBD 330 425 IPR035979 GO:0003676
Cla02g00500 1254 Gene3D - 325 458 IPR012677 -
Cla02g00500 1254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 94 IPR000504 GO:0003723
Cla02g00500 1254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 337 406 IPR000504 GO:0003723
Cla02g00500 1254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 562 622 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00500 K14573 NOP4, RBM28; nucleolar protein 4 - csv:101217384 1553.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00215 Cla-Chr2:2216806 Cla02g00500 Cla-Chr2:4938454 2.16E-103 dispersed
Cla02g00500 Cla-Chr2:4938454 Cla07g00298 Cla-Chr7:3361248 8.04E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g8 . . . . . Bpe12g00087 . . Cmo19g00694 . . . . . Sed05g2305 Cpe04g00115 Cpe15g00553 Bhi05g01787 Tan02g0774 Cmetu01g1478 . Hepe02g0245 . . Cla02g00500 Cam02g0510 Cec02g0510 Cco02g0517 Clacu02g0512 Cmu02g0508 Cre02g0841 Cone12ag1172 Cone8ag1219 . . . Csa07g00017 . Cme01g01365 Blo04g00526 Blo13g00542 Bda15g01076 Bda14g00569 Bpe15g00854 . Bma03g00563 Bma08g00787 . . . . . . Car19g00525 . . . . . . . . . . . . . . . . Lsi11g01125 . Chy01g00760 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009278 1 1 1 3 1 1 1 1 1 1 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60602 PF01426 BAH 8.70E-22 No_clan Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00500 Cla_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0