Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00509 ATGAACAGAGCATTACCGGAGATGTTGCATTGTTTGAACACTACCGGGAACTGTCCTGATACTCTCAGTGTTCTTGAGAGGCAGAGAGCTCGTTTGAAATGGCAGCAAGATCAGCTTTTGCAGCAGCAACAGCAGCCATTGAATCAGAGCTGTTTCAATAAGGTTGACTACGGCGGTGGATTTCCGCCGCCGGTGGCTGTTCCAGCGGATCACTTCACGGGGTTTCCTGGGTACATGAATGGCGGCGGCGGTGGTGGAGGTGGTGGGTTGTCACTTGTTGAGATGGTAATGGGGGCAGTGAAGTCTGACCCTGGGTTGAATGATGGGTGGTCTGAAATGGGAAAGTTTGATCCTTCTTTGTTGTTGAATGCCACTGCTTATGAGCTCAATTCTTCTCTCTCTAGAACCTCCAGCTGCCCGCCGGCGGTGGCTCCGACGGTGGCGGAGAAGATGGGGTCGGCGGCTGGAAGAGATAGCTTCAAGAAAAGGAAAGCTGAGAAAGTTCACAACACTACTACCACCACCACCAACAACAACAACAATAGCAAGGCAAAAGTTGAAACTAAATCAATGAGGGATTTGCAGGTGACTGTGGAAGAAGATAACATCAGCAGCAGCAAGGAGAAGAGGATCAAAGCAAGTTCAGAAGAAGGAGAATTATCCAAAACCACAGATCAAAACAGTACCAAAAACAACTCAACCACCACAACCACAACAAACAATAACAGAGAAACTTCAGCTGATACCTCAAAAGAAAACTCCAAAGCTTCAGAGGTTCAAAAGCCTGATTACATTCATGTCAGAGCTCGCCGTGGCCAAGCTACTGATAGCCATAGCTTAGCTGAAAGAGCTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCTGGAATGCTCGACGAGATCATAAACTATGTCCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCCATGAAGTTAGCTGCTGTTAATCCAAGGTTGGACTTCAATGTCGATGATCTCTTCAACAAAGAGGTTTTCCCCCCATCTTGCACCACCGCGAACTTCCCGACGATCGGCGGAATGTCATCGGAGATGACAGATCCTTCTTCCTACTTACAATTCAATCCAAATAATCAACAAATGGTCTCGTGTTGTGGATTAGAAATGGGAATCAATACCTCCGATGCCGCGGCTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCGGAAACTTTCCTTGATTCATCTTGCCTCACCCAATTTCAACCCTCTTCAGGGTGGGATGTGGATTTGCAGAATCTGTACAATGTGGGTTTCGATCAAGGAAGATCATCAAACGCCTTTTCATCTCAACCATATACAGGTTCAATTGAAGGAGGCATTATAAAGATGGAAATGTGA 1428 46.01 MNRALPEMLHCLNTTGNCPDTLSVLERQRARLKWQQDQLLQQQQQPLNQSCFNKVDYGGGFPPPVAVPADHFTGFPGYMNGGGGGGGGGLSLVEMVMGAVKSDPGLNDGWSEMGKFDPSLLLNATAYELNSSLSRTSSCPPAVAPTVAEKMGSAAGRDSFKKRKAEKVHNTTTTTTNNNNNSKAKVETKSMRDLQVTVEEDNISSSKEKRIKASSEEGELSKTTDQNSTKNNSTTTTTTNNNRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDDLFNKEVFPPSCTTANFPTIGGMSSEMTDPSSYLQFNPNNQQMVSCCGLEMGINTSDAAALRRTISAPVSFPETFLDSSCLTQFQPSSGWDVDLQNLYNVGFDQGRSSNAFSSQPYTGSIEGGIIKMEM 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5100515 5103438 - ClCG02G004870.1 Cla02g00509 266635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00509 475 Coils Coil 22 45 - -
Cla02g00509 475 MobiDBLite consensus disorder prediction 170 185 - -
Cla02g00509 475 SMART finulus 279 329 IPR011598 GO:0046983
Cla02g00509 475 Gene3D - 270 344 IPR036638 GO:0046983
Cla02g00509 475 MobiDBLite consensus disorder prediction 152 262 - -
Cla02g00509 475 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 271 342 IPR036638 GO:0046983
Cla02g00509 475 MobiDBLite consensus disorder prediction 220 247 - -
Cla02g00509 475 MobiDBLite consensus disorder prediction 186 219 - -
Cla02g00509 475 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 195 455 - -
Cla02g00509 475 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 19 186 - -
Cla02g00509 475 MobiDBLite consensus disorder prediction 155 169 - -
Cla02g00509 475 CDD bHLH_AtBPE_like 263 348 - -
Cla02g00509 475 MobiDBLite consensus disorder prediction 248 262 - -
Cla02g00509 475 Pfam Helix-loop-helix DNA-binding domain 277 324 IPR011598 GO:0046983
Cla02g00509 475 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 195 455 IPR024097 GO:0006355
Cla02g00509 475 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 19 186 IPR024097 GO:0006355
Cla02g00509 475 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 273 323 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00509 Cla-Chr2:5100515 Cla08g00911 Cla-Chr8:21618561 6.77E-45 dispersed
Cla01g00715 Cla-Chr1:8341695 Cla02g00509 Cla-Chr2:5100515 4.49E-52 transposed
Cla05g00770 Cla-Chr5:7352450 Cla02g00509 Cla-Chr2:5100515 1.51E-49 transposed
Cla05g02367 Cla-Chr5:35260244 Cla02g00509 Cla-Chr2:5100515 3.97E-46 transposed
Cla05g02655 Cla-Chr5:37753717 Cla02g00509 Cla-Chr2:5100515 1.84E-45 transposed
Cla08g01642 Cla-Chr8:29047749 Cla02g00509 Cla-Chr2:5100515 2.44E-35 transposed
Cla09g00792 Cla-Chr9:8020731 Cla02g00509 Cla-Chr2:5100515 1.14E-47 transposed
Cla10g01647 Cla-Chr10:32114589 Cla02g00509 Cla-Chr2:5100515 3.76E-39 transposed
Cla11g00412 Cla-Chr11:4667802 Cla02g00509 Cla-Chr2:5100515 2.28E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60603 PF00010 HLH 1.40E-06 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00509 - - csv:101216907 738.799