Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00512 ATGGCCTCAAGTTCTTTGAAGCAGCAGCGACCGGAGACGACGTGGACGGCAAAGCAAAACAAGCTGTTCGAGAAGGCATTGGCGTTGTATGATAAAGAGACGCCTGAGAGATGGCAGAATATCGCCATGGCGGTTGGCGAGAAGTCAGCCGACGAAGTTAAAAGACACTACGAGGTGCTCTTGGAAGATCTCCGACGGATCGAGTCCGGTCGTGTTCCTATTCCCAATTACCGGGGCGGCGGTAATAGAGATGAAGAGCTGAGGCTGCTGAAGTATCTTAAGCTTCAATGA 291 51.55 MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5187321 5189178 + ClCG02G004900.1 Cla02g00512 266638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00512 96 PANTHER PROTEIN RADIALIS-LIKE 3 1 78 - -
Cla02g00512 96 SMART sant 11 63 IPR001005 -
Cla02g00512 96 Gene3D - 7 74 - -
Cla02g00512 96 ProSiteProfiles Myb-like domain profile. 7 61 IPR001005 -
Cla02g00512 96 CDD SANT 14 61 IPR001005 -
Cla02g00512 96 SUPERFAMILY Homeodomain-like 15 68 IPR009057 -
Cla02g00512 96 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 78 IPR044636 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00512 - - - csv:101213626 176.407
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00512 Cla-Chr2:5187321 Cla05g01939 Cla-Chr5:31229761 7.64E-32 dispersed
Cla02g00512 Cla-Chr2:5187321 Cla02g00514 Cla-Chr2:5202369 9.03E-31 proximal
Cla11g00415 Cla-Chr11:4705248 Cla02g00512 Cla-Chr2:5187321 6.70E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g603 . . Bda06g00933 . . . . Bma12g00512 Cmo19g00684 . . . . . . Cpe04g00117 Cpe15g00548 Bhi05g01236 Tan02g0793 Cmetu01g1593 . Hepe02g0502 . . Cla02g00512 Cam02g0522 Cec02g0526 Cco02g0533 Clacu02g0524 Cmu02g0521 Cre02g0854 . . . . . . . Cme01g01408 . Blo13g00551 . . . . . . . . . . Cma19g00673 . Car19g00514 . . . . . . . . . . . . . . . . Lsi11g01111 . Chy01g00779 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000218 6 6 3 6 4 5 7 4 5 6 5 5 7 7 7 9 5 4 8 4 6 3 11 1 3 6 7 11 9 3 173
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60604 None None None None Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00512 Cla_Chr02 FPKM 15.972466 12.625718 1.170009 2.612865 8.792121 5.851105 8.725273 0.0 0.370775 0.0