Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00530 ATGGAGGAGAAGCGCCGCGACACCGCAAATTTACCCCCCAATACCACCGATTCTCCCTCATCGGAGCCGCCTTCTTCTCGCCGTCGTGCTGGAGCTCAGAAGCGAAAGGCTAGCTCTCTTGGTGGCTCTAACTCCTCATCCGGGCCCTCGAAACGCGTTACTCGCGACAAATCTGCGCTTTCGCATCCTCCAAATCATAACGGCCCCTTCACCAGAGCTCGACTTGGCCCTAACAATGGCGCTGGGGCAGCATCGGCTAACGCGGCTGGAGGTCTCGCCGCCGGATCAGTTAAGGCGGAGGGCTCTTTACTTCATTCCGAAGTTCAGCGTGGAGATGCGTTGGTCGCTGCGGCGGAAGAATTGAATAAGGCGAGTAGATTGGCTAATTTGGAGGCGTCTTTCGAAGCTGATTTCGAAGCTATTAAATCTCGAGGTGCAAATGTTCATGTCGTTCCGAATCATTGTGGTTGGTTTTCATGGACAAAAGTCCACCCAATTGAGGAACGCACAATGTCTACTTTTTTCAGTGGAAAGGTTGGCACTCGAAGTCCTGATATTTATATTGAGATACGTAATTGGATTATGAAAAAATTTCACGCAAATCCTAGTAAGCAGATTGAATCAAAAGATTTATCAGAGCTGGAAGTTGGAGAACTAAATGCTAGACAGGAGGTGATGGAGTTTCTAGACCATTGGGGTTTGATTAATTTTCACCCTTTCCTAGCCGCAGATTCAATTTCAACAAATGATGTAGATGATGAAAATCAAAAGGACTCTTTGGTTGAGAAGTTGTTTCACTTTGAAACGTTAGAATCCTGCCCATCTATTGTTCCAAAGATTAATGCCACCACTGCAGCTCCACCTAGATTGCTTCGAGAATCTGCAATTTCTGAAGAGATGGTGAGGCCTGAGGGTCCATCTGTTGAGTACCACTATTTTGATTTATGTTCGGAGTGCTTTAACAATGGCAAATTTGATTCTGATATGTCTTCGTCAGATTTTATTCTCATGGAGTCTGCTGGGGTTCCTGGTGCTAGTGGAGGTAAGTGGACAGATCAGGAAACTCTCCTCCTCCTTGAGGCTTTAGAGCTTTATAAGGAAAACTGGAATGAGATTGCAGAACATGTAGCCACCAAAACAAAAGCCCAATGTATATTGCACTTCATTCAAATGCCAATTGAGGATACCTTTCTTGAATCTGAAGGCAATGTGGAAGTCAGTGCAAAAGAAACAATTGTTCCACCTATAATTGAAAAAGATTCATCAGCTCCTTCTGATATCACTGGATCAATGGATAATAAGGCTGCTGGAAAAGAGGCTTCAAATGTAGAAACTGCGAGCAAGGAAGATACAGGTGAGGTAAAAGTTGGGCAGGACAATTCAAAATCAGAGGATGTTGAAGGAAAAGCTTCTTTAGATAACTCTAAATCAGAAGATGGTGATCAGAAGGTTTCTGAAGACATTGCCTTGAATGCTTTGCGGGAGGCATTTGAAGCCATTGGTTATGTATTAACACCTGAACACTCACTTTCATTTGCTGATGTAGGAAACCCTGTAATGGCACTGGCTGCATTCCTTGCACGCTTAGTTGGATCAGATGTTGCCAGTGCATCAGCCCATTTTTCTTTGAAAAGCATATCTCAGAAATCTCCCAGTTTAGACCTGGCTACAAGGAACTGCTTTATTTTAGAAGATCCACCGGATGACAAGAAGGCACAAACTAATTCAGAGAGCATTGACAATGTGGAAGCTCCGAAAAATGATAAGGAACAGTCTGCGAAACAGAGGGAAGACAATTCTACTTCAGTCTTAGATGACGGAGCCGTATCAACTAATAACAGTAATAACAAAAGTGGAGAATCTGTGACAAAGGGAACAACGGAGAATGGAAATTCTTCAGATGCTATTAGAGAACACAATCCAATCATTAATCATGGTTCAGATAAAACAAGTAATTTAAAAGAATTGGGAGAACCAGAATTGCCGAAGGGTGTAAAAACAGGCATTGTGAAGGAATCTGAAAATTTAGAATCAAAATTGACATCAAATCCAGTTGAAAAGTTGGGAGAAGGAACTCCTGTTGAAAAGCCATCACAATCTACGTTGTCATCAAAGGATGTGCACATGTCAGATTTGCAGCATGCTGAAAAATCTGAGATTCAGAAACAAGCTCCATCTCATTCTGCCAAAACTTCAAAAGAATTAAATGATGAGCCAAATCATTTACCGTCTGGGGATGAGCCTCAACCAATAATTTCTGCTAATTGTGTGAAAGAAGCCTCAAACGATGTAGCTATGGTGTCTGATTCTCACAATAAGAATGAACCTAGACAAACTGAAACATCTAAATCCGCGGTTGACCAGGGAGCAAGCAAGGTCTCTGATTCTTTGCCCTCAGCAGAGAATGCAACTCCACAATCAGTCAAACCAAATTCAGTTGTTGAAAGAGGAGCAGGGAGGAATGCTAACTGGAAACTTTTAGGAAAATTATCTCAAGATAAGCATGACTTGTTTATCCTTCAAGAGACAAAGCATTCAAGGGTTCATGGGAATCCATTCATAGCATTTAGAATTGTCGTTTTCCTGGAGGCATATTCTTTGTATGCAACTCACTACCTTCCTAGCCTGGGAGTCATGGATCATAGAATTTATTCATTCACTTCCATAAATGTAATAATGGTCCTTCCAGATGATAATGAAAGCAAGGACAATAAAGAAGAAAACTCCAATAGTGCGAGTAAAAAAGACGATAAAATTGATAAGCTGAAGCGTGCTGCAGTTACGACATTGTCAGCAGCTGCAGTGAAGGCAAAAGTTCTGGCTAATCAAGAAGAGCACCAAATCCGTCAGCTTGCCATGATATTAATCGAAAAACAGCTGCATAAGTTGGAAAGCAAGTTAGCATTCTTCAACGAGATGGATAATGTGACAATGAGAGTGAGGGAGCAACTAGACAGGTCAAAGCAGAGGCTTTTCCAGGAACGTGCACAGATAATTGCTGCTCGACTCGGCATACCTGCTTCATCGTCACGAGGTGTAGCACCGACATTACCAGCAAACAGAATGGCCATGAACTTTCCAAACTCAGCCCCAAGGCCTCCAATGGGCATGACGCCCCAAAGGCCACTGACTTCGGGACCACCGGGTATGGCTGCTACTAACCCTAACCCCCAATACACAACCACCAGTACAACAATTTCTGGGAGTTCATTTCGCCCTACAAATCAGGACACACTTTCTTCTGTTGGGACCAAGTAA 3258 42.97 MEEKRRDTANLPPNTTDSPSSEPPSSRRRAGAQKRKASSLGGSNSSSGPSKRVTRDKSALSHPPNHNGPFTRARLGPNNGAGAASANAAGGLAAGSVKAEGSLLHSEVQRGDALVAAAEELNKASRLANLEASFEADFEAIKSRGANVHVVPNHCGWFSWTKVHPIEERTMSTFFSGKVGTRSPDIYIEIRNWIMKKFHANPSKQIESKDLSELEVGELNARQEVMEFLDHWGLINFHPFLAADSISTNDVDDENQKDSLVEKLFHFETLESCPSIVPKINATTAAPPRLLRESAISEEMVRPEGPSVEYHYFDLCSECFNNGKFDSDMSSSDFILMESAGVPGASGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFIQMPIEDTFLESEGNVEVSAKETIVPPIIEKDSSAPSDITGSMDNKAAGKEASNVETASKEDTGEVKVGQDNSKSEDVEGKASLDNSKSEDGDQKVSEDIALNALREAFEAIGYVLTPEHSLSFADVGNPVMALAAFLARLVGSDVASASAHFSLKSISQKSPSLDLATRNCFILEDPPDDKKAQTNSESIDNVEAPKNDKEQSAKQREDNSTSVLDDGAVSTNNSNNKSGESVTKGTTENGNSSDAIREHNPIINHGSDKTSNLKELGEPELPKGVKTGIVKESENLESKLTSNPVEKLGEGTPVEKPSQSTLSSKDVHMSDLQHAEKSEIQKQAPSHSAKTSKELNDEPNHLPSGDEPQPIISANCVKEASNDVAMVSDSHNKNEPRQTETSKSAVDQGASKVSDSLPSAENATPQSVKPNSVVERGAGRNANWKLLGKLSQDKHDLFILQETKHSRVHGNPFIAFRIVVFLEAYSLYATHYLPSLGVMDHRIYSFTSINVIMVLPDDNESKDNKEENSNSASKKDDKIDKLKRAAVTTLSAAAVKAKVLANQEEHQIRQLAMILIEKQLHKLESKLAFFNEMDNVTMRVREQLDRSKQRLFQERAQIIAARLGIPASSSRGVAPTLPANRMAMNFPNSAPRPPMGMTPQRPLTSGPPGMAATNPNPQYTTTSTTISGSSFRPTNQDTLSSVGTK 1085
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5458000 5467974 - ClCG02G005100.2 Cla02g00530 266656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00530 1085 Pfam SWIRM-associated region 1 928 1006 IPR032451 -
Cla02g00530 1085 MobiDBLite consensus disorder prediction 415 483 - -
Cla02g00530 1085 Pfam SWIRM domain 152 237 IPR007526 GO:0005515
Cla02g00530 1085 MobiDBLite consensus disorder prediction 1047 1085 - -
Cla02g00530 1085 MobiDBLite consensus disorder prediction 899 918 - -
Cla02g00530 1085 MobiDBLite consensus disorder prediction 694 708 - -
Cla02g00530 1085 Pfam Myb-like DNA-binding domain 348 390 IPR001005 -
Cla02g00530 1085 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 44 1044 - -
Cla02g00530 1085 MobiDBLite consensus disorder prediction 602 638 - -
Cla02g00530 1085 MobiDBLite consensus disorder prediction 781 811 - -
Cla02g00530 1085 MobiDBLite consensus disorder prediction 564 601 - -
Cla02g00530 1085 MobiDBLite consensus disorder prediction 1 86 - -
Cla02g00530 1085 PANTHER SWI/SNF COMPLEX-RELATED 44 1044 - -
Cla02g00530 1085 SMART sant 346 394 IPR001005 -
Cla02g00530 1085 MobiDBLite consensus disorder prediction 37 65 - -
Cla02g00530 1085 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 348 396 IPR017930 -
Cla02g00530 1085 MobiDBLite consensus disorder prediction 1025 1085 - -
Cla02g00530 1085 ProSiteProfiles SANT domain profile. 345 396 IPR017884 -
Cla02g00530 1085 MobiDBLite consensus disorder prediction 709 723 - -
Cla02g00530 1085 MobiDBLite consensus disorder prediction 11 27 - -
Cla02g00530 1085 Gene3D - 345 396 - -
Cla02g00530 1085 Gene3D - 155 239 IPR036388 -
Cla02g00530 1085 SUPERFAMILY Homeodomain-like 345 398 IPR009057 -
Cla02g00530 1085 MobiDBLite consensus disorder prediction 443 483 - -
Cla02g00530 1085 MobiDBLite consensus disorder prediction 651 673 - -
Cla02g00530 1085 SUPERFAMILY Homeodomain-like 156 238 IPR009057 -
Cla02g00530 1085 ProSiteProfiles SWIRM domain profile. 149 246 IPR007526 GO:0005515
Cla02g00530 1085 CDD SANT 366 391 IPR001005 -
Cla02g00530 1085 MobiDBLite consensus disorder prediction 564 751 - -
Cla02g00530 1085 ProSiteProfiles Myb-like domain profile. 342 392 IPR001005 -
Cla02g00530 1085 MobiDBLite consensus disorder prediction 767 816 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00530 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - csv:101218015 1330.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00530 Cla-Chr2:5458000 Cla06g01758 Cla-Chr6:31086206 2.09E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g579 . . . . . . . . Cmo19g00671 . . . . . . . Cpe15g00532 Bhi05g01108 . . . . . . Cla02g00530 Cam02g0548 Cec02g0549 Cco02g0555 Clacu02g0549 Cmu02g0544 Cre02g0875 Cone12ag1145 Cone8ag1193 . . . . . . Blo04g00506 . . Bda14g00547 . . Bma03g00547 . . . . . Cma19g00658 . Car19g00501 . . . . . . . . . . . . . . . . Lsi11g01094 . Chy01g00796 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007586 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 3 1 2 2 1 1 1 1 1 2 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00530 Cla_Chr02 FPKM 9.961111 7.193352 17.218491 9.65391 17.456167 17.195574 14.464052 5.364842 6.180655 6.330589