Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00556 ATGTCCTATGAGGAGTGTCCCTCCAGCACAGTGCATTTCTGGTTCTTTGCCAACACTGAAATGGAAAAGGGCAATGAGAAGCAAATTCCTGATGGGGATGTTCAGATTTCCTTGAAGGAGGAGATTCTACAGCTTCAAGAACAATTACAAAGCCAGTTCGCCACTCGGCATGCCTTGGAGAAGGCAATCAATTTTCAGCCTCTCTCGCCTCACTCCGCTACCGATAATTCAATGCCAAAGGCTGAGATGGAACTGATTAAACAAATAGCAGTCTTGGAGTTAGAAGTCGTTTATTTGGAAAAATATCTTCTATCGCTATACCGTCGAACTTTCGACCAACACGTATCCTCTTTTTCTACCATGGATAATAGACTCGAATCATATACTGAACCTCATATTGCGATAGAAGGAGAACATTCTTTCATTAATTCTGACCATATCGTGTCGCCGGAAACTTTATCTGGTGATCAATCAAAAGGAAGAAATGAAGTTGAGGAACCAGAGAAGCTGTCACACTTTCATCGCAGCTATTCGTCTCTGTTGCAGAGATCGCCCGGTTCATCTAGAAACTACCCTCTGTCAAAGTATATGGCTAAAGCAGTAGATTCATATCATTCTCTTCCATTATCAATGCTGGAGCAATCTCAAATTGATGCTCCGAATTCTACGAGCCTCAGGGAGCATTTCGGTGCCTGTATATCCAATCGAACAGACGAGTCACCTAACTGGCTTTCTGAGAAGATGATCAAGTCCATCTCTGCAATATACCTTGAACTTGCAGAACCTCCTTTGATGAATCGCAACAATCCTTCTCCAATCTCACCTTTGTCATCCATGTATGAACTTTCTTCACAAGATTTGGGTAGTATGAGGAACTATGAGAAGTCATTCAACTCGCATTTCGAGAACCCTTTTCACACTGAAGAATTTAGTGCACCATACTACACAATGTTGAAGGTGCAATGGATTTCTAGAGAAAGAAAGGACTCAGATATCAACCACATGCTACAAGGTTTCAGGTCACTTATTTTTCGGCTCAAAGAAGTCAATCTCAAAGTGATGAAACACGACGAAAAGCTCGCATTTTGGATTAATGTACACAATACACTTGTAATGCATGCTTATTTGCAATATGGGATCCCCAAAAATAGTTTGAAGAGAATATCTTTGATACTCAAGGTGAGGATAGCTTCTATTCTCTCAATCAACCAAAACAAAATTCTACAATTACTTCTTTCATTTAGCTGTTGCACTTTTCAGGCTGCATACAATATTGGGGGACACATAATAAGTGTAGATATGATACAAAGCTCAATTCTGGGGTGTCGTTTGCCTCGCTCGGGACAGTGGCTGCACCTGTTCCTCTCGTCGAAAACAAAATTCAAGGTCAATGACGCACAGAAATCCTTTCCAATCAACCACCCTGAACCTCGGTTATACTTTGCTCTATGCTGTGGGAGTCATTCTGATCCAGCGCTCCGTATCTATACGGCCAAGAGGGTGAATGAGGAGCTGGAGGTTGCTAAAGAAGACTACATCATTTCAAATTTGAGGGCACACAAAGGGCAGAGAATTCTACTCCCAAAGATTGTGGAGTCTTTTGCCAAGGATTCTGGCTTATGCCTGGAAGATTTGGAGGACATTGTGGAGTGTCTAAGGCCCGACAGACGGATAAACGACATTCAGCAGCGGCAACGAAAGAAGTTTTGGAAGATTTCCTCCACAAGTTGGTTTGTTTTCCTCAACGGTTTCAAATCGGATGGTGTGAATCAGAAGTATTTTCGTCGGGAGAGATTTGATCTTGGAGGGATGACAAGAAGTTTGCCAAATGGTTGTTTCCCATTTGAGACAATTGGGGATACCTTTTGCCCATTTGGTTCTTTCGTTTACCCCCATAGAGAATTAGCAAGTAATATTATGGGTTTCATTTGGGGGAAGATGGAAGAACAAAGCACCGCTATAATTTTAGCTAGAGCCACGGAGTTGAGGCTAAAGATTAGAAACTCTGTTAACACCACCACCACCAGTTCCGCCGTAAATTCCCGGGAGATTCGGGATGATCGGTTTTCTGTGGATGAAAATAATGGCGTTGTTGGTTCCCGCCGGAGTGAGGCGGATGCGAGTGGTGGGGAGGCGGAGGAAGATGAGGAAGCGGTGAGGCTTTTGAACATCTGCGATGCACTCGAGTCTCTTGAGAATCAGCTTTCTTCGTTGCAGGATTTACAACAACGGCAAAGGTATGAGAAAGAAGTAGCCCTTTCTGAGATCGAACATAGCCGCAAGATTTTACTGGATAAACTGAAGAAGTACAAAGGAGGGGATTTGGAAGTGATACATGAGGCTTCAGCTTTTGTTGGTGAGACAGTGCAGCACAACCAGGATTTCATGCTTCCTCCATATCCAAGCCATCTTGGTAATGGCTACTTACATCCCTTCCCTTCTGGACCCAAATCTGTGAGTAATGGGCTAATCGACGCCACATCAAATAAAGCTACAAAGAAACTTAACAAATCAGAAAGGAAACTATCAAAATCGGATTCTCAGAACTCGAAGAATGGATTGGGATTTTTCATTAGTGTAGCTGCAAAATCAGTGGTTACTATTGTTGGCATAGTATCCATACTCCACTTGACTGGTTTTAGACCAAAGTTTGTAAGGAAAGTTGCTGCTTTGAAGGTTTTCGACGTTTTTCGACAGTCTGCAGGTGGAAATAATGGATCACACAACGCATGTCCTCCGGGTAAATTCCTCATGATGGAAGACGGGGAAGCTCGATGTGTAGTGAAAGAGAGAATTGAAGTTCCATTTTCTTCAGTTGTGGCTAAACCAGATGTAAACTATGGAAGCGGGTAA 2853 42.8 MSYEECPSSTVHFWFFANTEMEKGNEKQIPDGDVQISLKEEILQLQEQLQSQFATRHALEKAINFQPLSPHSATDNSMPKAEMELIKQIAVLELEVVYLEKYLLSLYRRTFDQHVSSFSTMDNRLESYTEPHIAIEGEHSFINSDHIVSPETLSGDQSKGRNEVEEPEKLSHFHRSYSSLLQRSPGSSRNYPLSKYMAKAVDSYHSLPLSMLEQSQIDAPNSTSLREHFGACISNRTDESPNWLSEKMIKSISAIYLELAEPPLMNRNNPSPISPLSSMYELSSQDLGSMRNYEKSFNSHFENPFHTEEFSAPYYTMLKVQWISRERKDSDINHMLQGFRSLIFRLKEVNLKVMKHDEKLAFWINVHNTLVMHAYLQYGIPKNSLKRISLILKVRIASILSINQNKILQLLLSFSCCTFQAAYNIGGHIISVDMIQSSILGCRLPRSGQWLHLFLSSKTKFKVNDAQKSFPINHPEPRLYFALCCGSHSDPALRIYTAKRVNEELEVAKEDYIISNLRAHKGQRILLPKIVESFAKDSGLCLEDLEDIVECLRPDRRINDIQQRQRKKFWKISSTSWFVFLNGFKSDGVNQKYFRRERFDLGGMTRSLPNGCFPFETIGDTFCPFGSFVYPHRELASNIMGFIWGKMEEQSTAIILARATELRLKIRNSVNTTTTSSAVNSREIRDDRFSVDENNGVVGSRRSEADASGGEAEEDEEAVRLLNICDALESLENQLSSLQDLQQRQRYEKEVALSEIEHSRKILLDKLKKYKGGDLEVIHEASAFVGETVQHNQDFMLPPYPSHLGNGYLHPFPSGPKSVSNGLIDATSNKATKKLNKSERKLSKSDSQNSKNGLGFFISVAAKSVVTIVGIVSILHLTGFRPKFVRKVAALKVFDVFRQSAGGNNGSHNACPPGKFLMMEDGEARCVVKERIEVPFSSVVAKPDVNYGSG 950
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5852445 5860478 - ClCG02G005370.2 Cla02g00556 266682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00556 950 Coils Coil 721 748 - -
Cla02g00556 950 Pfam Leucine-zipper of ternary complex factor MIP1 34 113 IPR025757 -
Cla02g00556 950 Pfam Protein of unknown function, DUF547 353 513 IPR006869 -
Cla02g00556 950 PANTHER TERNARY COMPLEX FACTOR MIP1 LEUCINE-ZIPPER PROTEIN 20 571 - -
Cla02g00556 950 MobiDBLite consensus disorder prediction 148 169 - -
Cla02g00556 950 PANTHER UNCHARACTERIZED 20 571 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00556 - - - csv:101203131 848.966
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00556 Cla-Chr2:5852445 Cla02g01271 Cla-Chr2:26703077 1.50E-113 dispersed
Cla05g00942 Cla-Chr5:9360422 Cla02g00556 Cla-Chr2:5852445 9.29E-08 transposed
Cla09g01750 Cla-Chr9:34855641 Cla02g00556 Cla-Chr2:5852445 5.38E-92 transposed
Cla01g01598 Cla-Chr1:30696140 Cla02g00556 Cla-Chr2:5852445 1.26E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g542 Blo02g00793 Blo15g00712 . Bda08g00903 Bpe07g00413 . . Bma12g00495 Cmo19g00655 Cmo11g01327 . Cma20g00866 . . Sed01g0313 Cpe04g00254 Cpe15g00518 Bhi05g01178 Tan02g0851 Cmetu11g2117 . Hepe02g0547 . . Cla02g00556 Cam02g0582 Cec02g0584 Cco02g0594 Clacu02g0581 Cmu02g0578 Cre02g0908 . . . Cone10ag1147 . . . Cme01g00007 . . . . . . . . Sed05g3633 . Cmo20g00876 Cma11g01782 Cma19g00642 Car11g01069 . . . Bhi10g02039 Tan05g1340 Cmetu11g1828 . . . . . . . . . . . Lsi11g01054 . Chy01g00008 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009608 1 2 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00556 Cla_Chr02 FPKM 22.592987 23.969425 92.766312 92.023972 26.887861 29.626497 26.753878 116.263145 124.0168 115.053856