Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00560 ATGAGAGAAGATCGAGGTGGAGGAGCCATGGTGATGGAGCGGCGAAATGGATTGAATCGGAAGCGATTTGGAGCTTATTTGCAGTCCGATCCGGCGATTTATACCGGTGATGATAATGATTTCTCTCCCCGGCATAGCAATGCCTCTGCTGCGACTAGTCCGGTGAATCACTACGACAAATCGCCGGCGAGTGGTGACGCTTCGCCTTATTTGATGTCGCCGTGGAATCAGTCCGCTTCGCCGTATTCGAAATCTCCGTGGATCGTTCGATCGGGTATGAATTTGTACGACGATGAATTTTATGCTCAGAATGGACTCATCGGCTCTCTGGTGCGAGAGGAAGGTCATGTGTATTCGTTGGCGGTGGCAGGGGATTTGTTGTACACTGGATCGGATAGCAAGAACATTCGTGTGTGGAAGAATTTAAAGGAGTTCACTGGATTTAAATCGAACAGTGGATTAGTGAAGTCGATTATCTTGTGTGGAGATAAGATTTTCACCGGACATCAAGACGGCAAGATTCGTATCTGGAAAGTTTCGTCCAAGAATCCGAAATCTCATAGCCGAATCGGAAGCTTACCGACGTTGAAGGAATTCGTCAAAAGCTCAATGAATCCAAGAAATTACGTGAAAGTCCGGCGCAATCGCAACGTCCTCCGTATAAAGCATTTCGACGCCATTTCCTCGATGAGCCTGAACGAGGAGTTAGGACTTTTATACTCCGGATCTTGGGACAAAACGATGAAGGTCTGGCGAATCGCAGATTCGAAATGCCTCGAATCAATCACCGCTCACGACGATGCCGTGAACGCCGTCGCATCAGGATTGGAAAGCCTCGTGTTCACCGGATCCGCGGACGGAACAGTGAAGGTCTGGCGGAGAGAGTTGCAGGGGAAAGGAACGAAGCATTTTCTGGTTCAGGTGTTGCTGAAGCAAGAAAATGCCATAACGGCGTTGTCTGTGAACCGGTCATCGGCGATTTTGTACTGCGGTTCATCAGACGGAGTGGTGAATTATTGGGAGAGCGAGAAGCATTTATCGCACGGCGGCATCCTCCGCGGCCATAAACTGGCTGTGCTGTGCTTAGCGACGGCCGGAAACTTGGTGTTCAGTGGATCGGCGGACAAAAACATCTGCGTGTGGCGGAGGGAAGAGAACAGCGGATCTCACACGTGTCTCTCTGTTCTGACCGGCCATTCAGGACCGGTCAAATGCTTAGCCGTTAAGGAAGATGAAGAAGAATCGCCATCGCCACCGGAAGAGGAAAGCAATGTCAAAAAGCTGTACGGCAGCTATAGCAACCGGCGGTGGATTGTGTACAGTGGTAGCCTGGACCGATCAGTGAAAGTGTGGCGCGTGTCGGAGAACGCGCCGGAGCTGTTGAAACTCCGGGACGCGGATAGGCCGTACTTAAGCAAGAAGTAG 1425 50.81 MREDRGGGAMVMERRNGLNRKRFGAYLQSDPAIYTGDDNDFSPRHSNASAATSPVNHYDKSPASGDASPYLMSPWNQSASPYSKSPWIVRSGMNLYDDEFYAQNGLIGSLVREEGHVYSLAVAGDLLYTGSDSKNIRVWKNLKEFTGFKSNSGLVKSIILCGDKIFTGHQDGKIRIWKVSSKNPKSHSRIGSLPTLKEFVKSSMNPRNYVKVRRNRNVLRIKHFDAISSMSLNEELGLLYSGSWDKTMKVWRIADSKCLESITAHDDAVNAVASGLESLVFTGSADGTVKVWRRELQGKGTKHFLVQVLLKQENAITALSVNRSSAILYCGSSDGVVNYWESEKHLSHGGILRGHKLAVLCLATAGNLVFSGSADKNICVWRREENSGSHTCLSVLTGHSGPVKCLAVKEDEEESPSPPEEESNVKKLYGSYSNRRWIVYSGSLDRSVKVWRVSENAPELLKLRDADRPYLSKK 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5979571 5980995 + ClCG02G005475.1 Cla02g00560 266686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00560 474 Pfam WD domain, G-beta repeat 141 178 IPR001680 GO:0005515
Cla02g00560 474 Pfam WD domain, G-beta repeat 350 381 IPR001680 GO:0005515
Cla02g00560 474 Pfam WD domain, G-beta repeat 391 451 IPR001680 GO:0005515
Cla02g00560 474 Pfam WD domain, G-beta repeat 114 140 IPR001680 GO:0005515
Cla02g00560 474 Pfam WD domain, G-beta repeat 257 292 IPR001680 GO:0005515
Cla02g00560 474 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 10 465 - -
Cla02g00560 474 CDD WD40 114 452 - -
Cla02g00560 474 PRINTS G protein beta WD-40 repeat signature 239 253 IPR020472 -
Cla02g00560 474 PRINTS G protein beta WD-40 repeat signature 280 294 IPR020472 -
Cla02g00560 474 PRINTS G protein beta WD-40 repeat signature 439 453 IPR020472 -
Cla02g00560 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 309 341 IPR001680 GO:0005515
Cla02g00560 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 352 391 IPR001680 GO:0005515
Cla02g00560 474 Gene3D - 90 214 IPR015943 GO:0005515
Cla02g00560 474 MobiDBLite consensus disorder prediction 40 59 - -
Cla02g00560 474 SMART WD40_4 345 382 IPR001680 GO:0005515
Cla02g00560 474 SMART WD40_4 255 293 IPR001680 GO:0005515
Cla02g00560 474 SMART WD40_4 141 178 IPR001680 GO:0005515
Cla02g00560 474 SMART WD40_4 103 140 IPR001680 GO:0005515
Cla02g00560 474 SMART WD40_4 302 341 IPR001680 GO:0005515
Cla02g00560 474 SMART WD40_4 389 452 IPR001680 GO:0005515
Cla02g00560 474 SMART WD40_4 214 252 IPR001680 GO:0005515
Cla02g00560 474 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 292 - -
Cla02g00560 474 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 465 IPR045182 -
Cla02g00560 474 MobiDBLite consensus disorder prediction 36 63 - -
Cla02g00560 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 292 IPR001680 GO:0005515
Cla02g00560 474 Gene3D - 302 468 IPR015943 GO:0005515
Cla02g00560 474 Gene3D - 215 301 IPR015943 GO:0005515
Cla02g00560 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 261 IPR001680 GO:0005515
Cla02g00560 474 SUPERFAMILY WD40 repeat-like 109 457 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00560 - - - csv:101202896 860.907
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00560 Cla-Chr2:5979571 Cla05g01970 Cla-Chr5:31512389 0 dispersed
Cla05g00661 Cla-Chr5:6130096 Cla02g00560 Cla-Chr2:5979571 6.52E-06 transposed
Cla02g00560 Cla-Chr2:5979571 Cla08g01527 Cla-Chr8:28026055 9.09E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g527 . Blo15g00718 Bda06g01024 Bda08g01318 Bpe07g00404 Bpe12g00071 . Bma12g00483 Cmo19g00652 Cmo11g01329 . . . . Sed11g0992 . . Bhi05g01171 Tan02g1913 Cmetu03g1602 . Hepe02g0551 . . Cla02g00560 Cam02g0588 Cec02g0589 Cco02g0600 Clacu02g0586 Cmu02g0584 Cre02g0914 . . . . . Csa07g00816 . . . Blo13g00559 Bda15g00021 Bda14g00532 . . . . . . . Cma11g01780 Cma19g00639 . . . . . . . . . . . . . . . . . . . . Chy01g00013 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009507 6 1 2 1 2 1 0 1 1 1 1 1 2 0 1 2 1 0 0 1 1 1 1 1 0 0 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00560 Cla_Chr02 FPKM 17.974134 19.819464 1.557906 1.942737 7.530276 6.105601 7.409909 0.497289 0.801862 0.528016