Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00568 ATGTGCCGGCGGGAAGGGTTTTTGTGGCAGTTCCGGCAGAAAGGATTTTGTTGCGTTTCAGTAGCAATGAAGGCCATGGCGACCGTGCAGGATCTGATCGAGGAGGCTAAACTTCGAACGGTTTGGTGGGCTCTGTGTATTTTCGCGATTTCATACTTTTTGACCCATACTAGTAAGTCAATGTGGATGAATTTACCCCTAGCAATTCTATTAGTTTCTGCACTACGTATACTGTTCAATGAGGTAGAGTTCCGTAGAAAGGTCCGACCTATTCATCAACAGACATACTTATCTCACCTGGAGAAGAAGCAGTTATCTGTTAATGACTCGCGCCTGTCTTCAGCGCTTCCTCCACCAAGATGGAAAAGGAAAATTGATTCTCCTGCTGTGGAGGCTGCAATGAAGGATTTCATAGATAAAATATTGAAGGATTTTGTGGTTGACTTGTGGTATTCAGAAATAACCCCAGACAAGGAGTTTCCTGGGCAGATACATGCGCTGATCATGGACGCCCTTGGTGAGATAGCAGTTAGGGTGAAAGAGATAAACCTAGTTGACTTGCTCACGAGGGATGTTGTTGATCTAGTAGGTGACCACTTGGACCTTTTTAGAAGAAACCAAGCTGCCATCGGTGTTGATGTTATGGGAACGCTGTCTTCTGAGGAGAGAGATGAAAGGTTGAAACACCATCTTATGGCTTCGAAGGAGCTTCATCCAGCATTGGTGTCTCCTGAGAGTGAGTACAAGGTCCTTCAACGGCTCATGAGTGGAGTGTTGACTTCAGTACTGAGACCAAGAGAAACTCAATGTCCTGTTGTTCGATCCATTGCTCGAGAACTTTTAACATGCTTGGTGATGCAACCTCTTATGAATTTTGCAAGTCCTGGGTGCATAAATGAGTTGATCGAATGTATAGTCCTTGCCACTAGAGCTGAGAATGACTCGGTGATAGGCAGTCAACAACAAACTTATTCTACAGAGCATGACAAAGACCATTCTTCTACTGCTGGATTCGTGCATGATGAAGATTTGAACAAAAGGAACTCATCTTTAAATCCAGGGAATGGTTCAGAGCTCGCTAAAGTTAACAATAAAAAAGAAATAAGCTCAGATTACATGTTCCAGGATGAGCCTTTGCATCTGAGACATGGTGATTGGGGCCGTGCATTGAATGCAGCAACCCAAAGGAGAACTGAAGTTCTTATGCCTGAAAATCTTGAAAACATGTGGACTAAAGGACGGAATTATAAGAAGAAAGAAAATAAGATCATTAAAGTAGGAGATTCTGAGCCTATGGCTACAACAAAGAATTCTGGAACAGGTATCATGCAGCCTGCAACAACGAGGGAGGAAATGTTGACTGACAAGCATCATTCTTCTACTGGACCAGAAGAAAAGGCAATAGTTGGGAGAACACCTGTAAGACATTCTGATCTCCTTATGACATCCAAACCAAGTGATGAGAACAAAATTAGTTTTCAGTCTTCTCTGGAACTTCAGAAGGATTCATCTATCGATGGGAAGTTTATTGCTAATGTATTAAAGGATGTTGATAATCTTACTCCTGCTAGTGCAACTAAAACTCCACTCAAGAGATCCAATAGTACTTCTGCTTTGAAAACTGAAGTTAGTGTAGAAAAGACTTCTACAGAAGGTGGAAGATCAATTATATCAGATTTCTATGGTCCCAATTTTGGCAAGCATGGTGAAGAACCCCTTTCTAAGAGTGCCTCGGATATGTTGATCCAAAAAGAAGGACTACTTGTTCCCAAACTTAGGAGTCGGGTAATGGGTGCATACTTTGAGAAGCTTGGTTCAAAATCTTTTGCTGTGTATTCAATAGCTGTTACAGATGCAAATAACAGAACTTGGTACCGAAATTTTGAGCGCCTACATCGGCATCTTAAAGATATTCCTAACTATACACTGCACCTGCCTCCCAAACGAATATTTTCATCAAGCACAGAAGATGCTTTTGTTCACCAACGTTGCATTCAACTTGACAAATATTTGCAGGAGCTATTATCAATTGCAAATGTTGCTGAGCAGCATGAAAACTATTCGTTTGGAAAATCTTCCTCAGTGATGAGAACATTAGCAGTTTCTTTGGTTCCTTTGTTATTTGCTATTGTTGATGATTTCAAACCATATTTAATCACAGTCAATGTGGATGATGCCGTGGATGACATTGTACGTCAGTTTAAAGGGGTTTCAGATGGTTTCATGCGTAAAGTTGTTGGTTCAACCTCACCTGATGAAGCTTGTGCCTCATCAAATTATGACCGGAAGTTTTCATTTAATTCAGCAGACTTAAGCAGACATGTTTCTGCACAATATAATTTAGAGATAGCTAATAACATTTCTGACGAGGATGGTGAGCGAATTGAAAGTCAAAATCGTGAAAAGGTTAGTGGATGGCATTCAGACAATGAATTAAACTCTAAGAGCTTTCCCCCTCGTGTGATCAAACGTGGTGAAGAGTCAGATAAATTAGTTGTCGACAAGAAGAATGATCTAGAATTGAGGTCTGGGGCCAGCCATGGAGGATTTTCACAAACGTCGTATCATATGGAAGATCCAGAAGGAATGCCACCAGAGTGGACTCCACCTAATGTCAGCGTACCTCTTCTAAATCTGGTTGACAAGATATTTCAGCTTAACAGGAGAGGCTGGATAAGGAGGCAGGTCCTTTGGATATCAAAACAAATATTACAGTTAATTATGGAAGATGCTATTGATGACTGGATTGTCAGGCAAATACACTGGCTACGGAGGGAGGACATCATTGCTCAGGGTATTCGATGGGTCCAAGATGTTCTCTGGCCCAATGGAATATTCTTCATACAATTGAGGAATGCTCAAAGTGAAGATGATGATTCTCAATCTACTACTAGCCGAGCTGATGGAAGCAAGATCCCCAAGCCTGGATCTTTTGAGCTGCAGCTCGAGGCTGCTCGCAGAGCTAGCGATGTCAAGAAAATGCTTTTTGCTGGGGCTCCAACACCATTGGTAAGCTTGATAGGGCACAAGCAATACAAAAGATGTGCAAAAGATATTTACTACTTCACTCAGTCTACCATCTGTGTGAAGCAACTTGGGTATGGATTACTCGAACTATTACTCGTATCACTTTTCCCCGAGCTACGGAATTTAGTTTTGGAGATTCATGACAAGTCGCACGTCTCGCAACCAGTTTAG 3198 41.74 MCRREGFLWQFRQKGFCCVSVAMKAMATVQDLIEEAKLRTVWWALCIFAISYFLTHTSKSMWMNLPLAILLVSALRILFNEVEFRRKVRPIHQQTYLSHLEKKQLSVNDSRLSSALPPPRWKRKIDSPAVEAAMKDFIDKILKDFVVDLWYSEITPDKEFPGQIHALIMDALGEIAVRVKEINLVDLLTRDVVDLVGDHLDLFRRNQAAIGVDVMGTLSSEERDERLKHHLMASKELHPALVSPESEYKVLQRLMSGVLTSVLRPRETQCPVVRSIARELLTCLVMQPLMNFASPGCINELIECIVLATRAENDSVIGSQQQTYSTEHDKDHSSTAGFVHDEDLNKRNSSLNPGNGSELAKVNNKKEISSDYMFQDEPLHLRHGDWGRALNAATQRRTEVLMPENLENMWTKGRNYKKKENKIIKVGDSEPMATTKNSGTGIMQPATTREEMLTDKHHSSTGPEEKAIVGRTPVRHSDLLMTSKPSDENKISFQSSLELQKDSSIDGKFIANVLKDVDNLTPASATKTPLKRSNSTSALKTEVSVEKTSTEGGRSIISDFYGPNFGKHGEEPLSKSASDMLIQKEGLLVPKLRSRVMGAYFEKLGSKSFAVYSIAVTDANNRTWYRNFERLHRHLKDIPNYTLHLPPKRIFSSSTEDAFVHQRCIQLDKYLQELLSIANVAEQHENYSFGKSSSVMRTLAVSLVPLLFAIVDDFKPYLITVNVDDAVDDIVRQFKGVSDGFMRKVVGSTSPDEACASSNYDRKFSFNSADLSRHVSAQYNLEIANNISDEDGERIESQNREKVSGWHSDNELNSKSFPPRVIKRGEESDKLVVDKKNDLELRSGASHGGFSQTSYHMEDPEGMPPEWTPPNVSVPLLNLVDKIFQLNRRGWIRRQVLWISKQILQLIMEDAIDDWIVRQIHWLRREDIIAQGIRWVQDVLWPNGIFFIQLRNAQSEDDDSQSTTSRADGSKIPKPGSFELQLEAARRASDVKKMLFAGAPTPLVSLIGHKQYKRCAKDIYYFTQSTICVKQLGYGLLELLLVSLFPELRNLVLEIHDKSHVSQPV 1065
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6057836 6071212 - ClCG02G005570.2 Cla02g00568 266694

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00568 1065 SUPERFAMILY PX domain 597 689 IPR036871 GO:0035091
Cla02g00568 1065 Pfam PX domain 625 689 IPR001683 GO:0035091
Cla02g00568 1065 Pfam Sorting nexin C terminal 891 1026 IPR013937 -
Cla02g00568 1065 ProSiteProfiles PX domain profile. 590 697 IPR001683 GO:0035091
Cla02g00568 1065 MobiDBLite consensus disorder prediction 523 547 - -
Cla02g00568 1065 ProSiteProfiles PXA domain profile. 127 310 IPR003114 -
Cla02g00568 1065 SMART PXA_3 127 310 IPR003114 -
Cla02g00568 1065 PANTHER PX SERINE/THREONINE KINASE PXK 27 1064 - -
Cla02g00568 1065 MobiDBLite consensus disorder prediction 843 862 - -
Cla02g00568 1065 PANTHER SORTING NEXIN CARBOXY-TERMINAL PROTEIN 27 1064 - -
Cla02g00568 1065 MobiDBLite consensus disorder prediction 325 347 - -
Cla02g00568 1065 Pfam PXA domain 127 303 IPR003114 -
Cla02g00568 1065 Gene3D - 593 698 IPR036871 GO:0035091
Cla02g00568 1065 MobiDBLite consensus disorder prediction 319 359 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00568 K17925 SNX13; sorting nexin-13 - csv:101222929 1837.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00568 Cla-Chr2:6057836 Cla09g00185 Cla-Chr9:1869873 1.33E-62 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g500 . . . . . Bpe12g00069 . . Cmo19g00647 Cmo11g01333 . . . . . Cpe04g00257 Cpe15g00511 Bhi05g01163 . . . Hepe02g0556 . . Cla02g00568 Cam02g0598 Cec02g0598 Cco02g0609 Clacu02g0594 Cmu02g0592 Cre02g0921 Cone12ag1120 Cone8ag1165 . . . Csa07g00810 . Cme01g00015 . . Bda15g00024 . . . . . . . . Cma11g01777 Cma19g00630 Car11g01074 Car19g00481 . . . . . . . . . . . . . . . . Lsi11g01041 . Chy01g00019 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009346 0 3 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00568 Cla_Chr02 FPKM 3.338473 3.411882 2.807666 3.412686 3.35473 3.835217 3.843956 1.428994 1.187266 1.190459