Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00570 ATGGGAGAGACTTTGGCCATGGATTCTACCTTCATTCAACCCATCGAGCACCGCCCCAAGCTCGAACCCCTCGACTCCATTGACGAACAAGTTCCAACCATAGATCTCTCCATCTCCCTCTCTCGCACCACCCATCAGCTCGTCTCTGAAATAGCCTCTGCTTGCCAGAACTGGGGTTTCTTCCAGGTAATCAACCATGGAGTTCCCCACGAGCTGCTCGCGCGTATTGAAAAAGCTGCCAAGTTGTTTTTTGATCAGCCAATGGAGGAGAAGAGGAAGGTGAAGAGAGATGCAGCTAATGCTATGGGGTTTCATGACGGTGAGAATACCAAAAACGTTAGGGATTGGAAGGAAGTGTTTGACTTCTTGGTTAAGGATGGGACGTTGATTCCGGCTTCGCATGAACCAAATGACAAGGAATTGAGGGTATTGTGTAATCAGTGGCCGCAATATCCCCCTGGGTTTAGGGAAACATGCCAGGAGTATGCAAGAGAGTTGGAATTGCTAGCTCATAAGCTACTGAGGCAAATTTCTTTGAGTCTAGGCCTAGCTGGTGCTGATGGATTGAAGGGCTATTTCAACGATGAGCAAACGAGCTTGGTGAGGTTGAATCACTATCCTCCATGCCCGTCTCCGGATCTCGTGCTTGGCGTTGGCCGTCACAAAGATGCTGGTGCCTTGACAATCCTTGCTCAAGATGGTGTTGGAGGGCTGCAAGTGAAGAGAAAATCAGATGGAGAATGGATTCCTGTCAAACCAATCCCAAATGCATATATTGTCAACATTGGTGATGTTGTTCAAGTTTGGAGCAATGACAAATATGAAAGTGTGGAGCACAGGGTGGTGGTGAATACTGAGAAAGAAAGGTTTTCTTTTCCATTCTTCTTCTTTCCAGCTCACCATATGATGGTGAAACCATTGGAGGAGCTTGTGAATGAGCAAAACCCACCAAAATACAGAGAATACAACTTCGGAAAGTTCTTTGCTTCTAGAAACCGCAGTGATTTCCAGAAGCAAAAAGTGGAAAACATCCAAATTGACCATTTTAGGCTGCCTTTGTGA 1062 46.33 MGETLAMDSTFIQPIEHRPKLEPLDSIDEQVPTIDLSISLSRTTHQLVSEIASACQNWGFFQVINHGVPHELLARIEKAAKLFFDQPMEEKRKVKRDAANAMGFHDGENTKNVRDWKEVFDFLVKDGTLIPASHEPNDKELRVLCNQWPQYPPGFRETCQEYARELELLAHKLLRQISLSLGLAGADGLKGYFNDEQTSLVRLNHYPPCPSPDLVLGVGRHKDAGALTILAQDGVGGLQVKRKSDGEWIPVKPIPNAYIVNIGDVVQVWSNDKYESVEHRVVVNTEKERFSFPFFFFPAHHMMVKPLEELVNEQNPPKYREYNFGKFFASRNRSDFQKQKVENIQIDHFRLPL 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6086806 6089325 + ClCG02G005590.1 Cla02g00570 266696

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00570 353 SUPERFAMILY Clavaminate synthase-like 11 336 - -
Cla02g00570 353 PRINTS Isopenicillin N synthase signature 51 68 - -
Cla02g00570 353 PRINTS Isopenicillin N synthase signature 221 242 - -
Cla02g00570 353 PRINTS Isopenicillin N synthase signature 286 304 - -
Cla02g00570 353 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 6 343 - -
Cla02g00570 353 PANTHER DIRIGENT PROTEIN 6 343 - -
Cla02g00570 353 Pfam 2OG-Fe(II) oxygenase superfamily 199 298 IPR044861 -
Cla02g00570 353 Gene3D - 2 338 IPR027443 -
Cla02g00570 353 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 197 298 IPR005123 -
Cla02g00570 353 Pfam non-haem dioxygenase in morphine synthesis N-terminal 31 150 IPR026992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00570 - - - csv:101209915 585.104
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00570 Cla-Chr2:6086806 Cla05g00637 Cla-Chr5:5937739 3.32E-64 dispersed
Cla02g00780 Cla-Chr2:9906221 Cla02g00570 Cla-Chr2:6086806 5.35E-35 dispersed
Cla10g01109 Cla-Chr10:25414484 Cla02g00570 Cla-Chr2:6086806 2.21E-44 dispersed
Cla02g00570 Cla-Chr2:6086806 Cla02g00572 Cla-Chr2:6126631 8.23E-22 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g494 . . . . . . . . . Cmo11g01335 . . . . . Cpe04g00259 . . . . . . . . Cla02g00570 Cam02g0600 Cec02g0600 Cco02g0611 Clacu02g0596 Cmu02g0594 . . . . . . . . Cme01g00017 . . . . Bpe15g00885 . . . . . . . . Car11g01076 . . . . . . . . . . . . . . . . . Lsi11g01040 . Chy01g00022 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000982 2 2 0 0 1 2 2 2 3 3 2 2 3 2 3 3 2 4 3 3 4 2 3 1 3 4 5 3 3 12 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00570 Cla_Chr02 FPKM 13.729097 14.787423 21.912712 18.793938 18.530544 18.398401 18.368031 10.426311 11.843122 13.355746