Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00571 ATGCAAAAACTTTTGCTACCATTTTTCCTTCTCATTTCCGTCTCTTTGTCTTCCCAAACACAAAGCTCAATTCTCCTCCATGATGACTCCCAAGGAAGCAAATTACAGTTTGTGCTCGTCCATGGCGCTTGCCTGGGTGCCTGGTCTTGGTACAAGGTCGCAACCTTGTTGCGAACCGCTGGTCACAATGTCACCGCACTCGACATGGCTGCTTCCGGGATCAACCCGACGCAAGCCGAGTCATTGACATCGCTTACCGAGTACTACCAGCCATTGTCGAGGTTCATGGAAGCCGTAGCAACCGACGACAAGATCGTTCTCGTCGGACACAGCCTAGGCGGCCTCGGGATCTCGATGGCCATGGAGAGATTCCCTGAGAAAATCTCTGTTGCCATTTTTGTAACTGCAGCCATGCCTGGTCCAATCTTGGGGCTTTCTTCCATACAGGAACAGAAGAGAATACTTGGAATGTACAGTGGCTTCTACACAGAGGAGAAATCAAAAGCTTCTAATTCAGATCTCTTCCTATTTTCCCAAGAAGATTTAGAAACCAAGCTTTTCCCACTGTCTCCACCTGAGGATGTGACATTGGCATCAACATTGGTGAGGCCCCAAGCAATGTTTGGTCTATTGGAGTCAATGAAGGAGCTGCAACTAAGCAAAGAGAAATATGGGTCAGTGAAAAGGGGTTTCATTATATCAGAGAAGGACCAAATGACCACCAAGATCATGGTGTGGGCAATGCTCATTTTAAACAGGCCTGATCGTGTGGCTGAGGTTAAAGGATCAGATCATATGGTCATGACTTCAAAGCCTCTTGAACTTGCTCAACAACTCTCCACCATAGCTCAAGAATTTGCTTCTTCTTCTTCTTCCACTTATATTGATATGTCATCTTTGAACCAAGAATCGGATAAAATCGAAACAATGAAAGAACAAGAAAAGTCCGCATCTCTCCCCTTTCCTTTCCCTTTCGCCGCCGCCGCCGCCGCCTCTCCCAGCCTCCCTCTGCTCCGCCATCTCTTCCTCTCTCTCGCTCTCCATCGCCGGCGTTCTCCGGAGGTAGTAGCGTCGGGTGTCATTGACTTTTGCCTTGAGTGTCGCTGCCGGTTTCGAGGACTCTCGCTGCCTGTCTCGCTCTCCCGCTCTCACTTTCTCCCCTCGCCTCACGGTCTCTCGCGCCCAATCGCACTGTCACTCTCGTGGTATCGCTCTCTCGCTGGCTCCCGCTCTCTCGCGCTCTCCCGCTCGTCTCACGCGCCCCGCGCCCAGTGTCGCCGCAAGCCTTTAGACTCTCGCTCTCTCGCCGCGGTTCCTTTCTTGTCCGGCCAGAACAGTACCTTTAAGTGTTTGGCAATTATCTTAGCCCGTAGGATCGGAGGAAGCTACGAGTTGGATCGCGTTCGGGAGGTTGTGTTTCTTCGGGTTCACCAGAGGTTGTGTTCCTTCGGGTTCACCAGAGGTTGTACTCTTTTGAGTACATTAGAGGTTTGTGTTCCTTCGGGATCACCAGAGGTAAGAGTTTCCTTCGGGGCTCTAGAGCAAATCGTATGGGTGTCTCTCAGTCATCGTGCGTCGTCTCTCCGCCATCTAGAAGCAACAAATCTTGTGTCGTCTCTCGGCCGTCTATCGTGCAGTAACGGTTCAAGCAACATGGTCGTTTGTTCGTGCAACAGCAGTCCGTCATGCGTCCTGCGTTGTGCATCAGTTGGTCCGTTGTGCGTCAGTTCAGTCGTCTGTCGACGTTAG 1749 51.11 MQKLLLPFFLLISVSLSSQTQSSILLHDDSQGSKLQFVLVHGACLGAWSWYKVATLLRTAGHNVTALDMAASGINPTQAESLTSLTEYYQPLSRFMEAVATDDKIVLVGHSLGGLGISMAMERFPEKISVAIFVTAAMPGPILGLSSIQEQKRILGMYSGFYTEEKSKASNSDLFLFSQEDLETKLFPLSPPEDVTLASTLVRPQAMFGLLESMKELQLSKEKYGSVKRGFIISEKDQMTTKIMVWAMLILNRPDRVAEVKGSDHMVMTSKPLELAQQLSTIAQEFASSSSSTYIDMSSLNQESDKIETMKEQEKSASLPFPFPFAAAAAASPSLPLLRHLFLSLALHRRRSPEVVASGVIDFCLECRCRFRGLSLPVSLSRSHFLPSPHGLSRPIALSLSWYRSLAGSRSLALSRSSHAPRAQCRRKPLDSRSLAAVPFLSGQNSTFKCLAIILARRIGGSYELDRVREVVFLRVHQRLCSFGFTRGCTLLSTLEVCVPSGSPEVRVSFGALEQIVWVSLSHRASSLRHLEATNLVSSLGRLSCSNGSSNMVVCSCNSSPSCVLRCASVGPLCVSSVVCRR 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6098481 6106184 + ClCG02G005600.2 Cla02g00571 266697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00571 582 Gene3D alpha/beta hydrolase 30 287 IPR029058 -
Cla02g00571 582 PANTHER ESTERASE PIR7A-RELATED 22 285 - -
Cla02g00571 582 Pfam Alpha/beta hydrolase family 37 277 IPR000073 -
Cla02g00571 582 PANTHER METHYLESTERASE FAMILY MEMBER 22 285 IPR045889 -
Cla02g00571 582 SUPERFAMILY alpha/beta-Hydrolases 31 281 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00571 - - - cmo:103495205 429.098
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00571 Cla-Chr2:6098481 Cla03g00604 Cla-Chr3:7073325 3.01E-81 dispersed
Cla11g00530 Cla-Chr11:6033337 Cla02g00571 Cla-Chr2:6098481 2.51E-25 dispersed
Cla02g00571 Cla-Chr2:6098481 Cla02g00573 Cla-Chr2:6137759 1.60E-67 proximal
Cla06g00743 Cla-Chr6:9790721 Cla02g00571 Cla-Chr2:6098481 2.93E-11 transposed
Cla01g01623 Cla-Chr1:31006677 Cla02g00571 Cla-Chr2:6098481 1.36E-30 wgd
Cla02g00571 Cla-Chr2:6098481 Cla09g01724 Cla-Chr9:34552886 3.52E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g491 . . . . . . . . . Cmo11g01336 Cma02g00433 . Car02g00288 . . . . . . . . . . . Cla02g00571 Cam02g0601 Cec02g0601 Cco02g0612 Clacu02g0597 Cmu02g0595 Cre02g0924 . . . . . . . Cme01g00018 . . . . . . . . Sed01g0330 Cmo02g00435 . . . Car11g01077 . . . Bhi10g02066 Tan05g1380 Cmetu11g1580 . Hepe08g1056 . . . . . . . . . Lsi11g01039 . Chy01g00023 Cme11g00501
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000481 0 4 0 1 0 6 3 6 4 3 4 4 3 4 5 4 4 6 3 5 4 5 3 3 7 4 5 3 4 5 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00571 Cla_Chr02 FPKM 5.127223 5.755595 3.316993 3.647268 10.586925 10.105568 11.068681 0.315597 0.0 0.60166