Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00573 ATGGAGAAGAACAAGAACAAGTACCTGTTACTACTAATTCTGGCGTCTCTCTTCTTCCAACTGTCCAATACTTCTCAGCCGCATTTTCACAAACAATTTGTGTTCATCCACGGATCCTGCCATGGCGCCTGGTCCTGGTTCAAACTCCTCCCACTTCTCGAATCCTCTGGCCACCACGTCACCGCCCTCGACTTGCCCACCTCCGGAATCGACCTCCGGCAGCCGGACACCGTCCGATCCATTTCCCAATACTTCCAGCCTCTGACTGAGTTCATGTCGGCTCTCCCTCGGCACCAAAAGGTGATCCTCGTCGGGCATAGCCTCGGCGGATTGGCCGTCGCGAAAGCCATGGAGGAGTTTCCGGCGAGGATTTCCGCCGCCGTGTTCGTCACTGCTTCGATGCCCGGCCCGGCCCTGAACATATCGATGATTTATGGGAAGGTGTTCGAGAGGAATGAATCGATGATGGATAGCGTTTACTCGTACGGCGACGGCCCCAATCGGCCTCCCACAGCCGCGCTTTTTGGCTTCCAAAGTTTATCAGCTCAGCCCACCCGAGTAATTAATTATACAAATAATACACAGGATTTAACACTAGTGACATTGTTAATGAGGCCAGTTCCATTGTTTAGCGAAAAAGACGTGTCCAATGAATTGAAGTTGTCGGAAGAAAATTACAGTTCAGTTAAACGAGTATTCGTCATGTCGGAAAAGGACTTGGTTGGTAATAGAGATTTTCAACGGTGGATGATTGAGAAGAACCCACCTGATCGTGTGGTGGAGATCGAAGGATCAGATCATATGGTGATGATGTCTAAACCATTGGAGTTGTGGGCCCATCTTGAACTCATTGCTCAATGCTACCATTAG 870 49.77 MEKNKNKYLLLLILASLFFQLSNTSQPHFHKQFVFIHGSCHGAWSWFKLLPLLESSGHHVTALDLPTSGIDLRQPDTVRSISQYFQPLTEFMSALPRHQKVILVGHSLGGLAVAKAMEEFPARISAAVFVTASMPGPALNISMIYGKVFERNESMMDSVYSYGDGPNRPPTAALFGFQSLSAQPTRVINYTNNTQDLTLVTLLMRPVPLFSEKDVSNELKLSEENYSSVKRVFVMSEKDLVGNRDFQRWMIEKNPPDRVVEIEGSDHMVMMSKPLELWAHLELIAQCYH 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6137759 6138987 + ClCG02G005640.1 Cla02g00573 266699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00573 289 Gene3D alpha/beta hydrolase 29 289 IPR029058 -
Cla02g00573 289 PANTHER METHYLESTERASE FAMILY MEMBER 17 287 IPR045889 -
Cla02g00573 289 SUPERFAMILY alpha/beta-Hydrolases 33 282 IPR029058 -
Cla02g00573 289 Pfam Alpha/beta hydrolase family 33 279 IPR000073 -
Cla02g00573 289 PANTHER ESTERASE PIR7A-RELATED 17 287 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00573 - - - csv:101221751 408.683
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01623 Cla-Chr1:31006677 Cla02g00573 Cla-Chr2:6137759 1.81E-40 dispersed
Cla02g00573 Cla-Chr2:6137759 Cla09g01724 Cla-Chr9:34552886 1.40E-90 dispersed
Cla02g00571 Cla-Chr2:6098481 Cla02g00573 Cla-Chr2:6137759 1.60E-67 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g484 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g00573 Cam02g0604 Cec02g0604 Cco02g0617 Clacu02g0599 Cmu02g0597 Cre02g0927 . Cone8ag1161 . . . Csa07g00793 Chy11g00429 Cme01g00021 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00026 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000481 0 4 0 1 0 6 3 6 4 3 4 4 3 4 5 4 4 6 3 5 4 5 3 3 7 4 5 3 4 5 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00573 Cla_Chr02 FPKM 13.677159 18.174101 325.638306 325.724243 7.707649 8.639997 7.299736 503.953522 506.494476 498.249603