Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00576 ATGGATCGGTCGGCACTCACTGTTGGACCGGGAATGGACATTCCGATCATGCACGATAGCGATCGTTATGAGCTTGTGCGCGACATTGGCTCTGGAAACTTCGGGATTGCCAGATTGATGAGAGATAAGCAAACCGGGGAGCTCGTTGCCGTCAAGTACATCGAGAGAGGTGAGAAGGTTAGTCAGCTGATAGATGCGAACGTGAAGCGGGAGATAATAAACCACAGATCTTTAAGGCATCCTAACATTGTCAGATTCAAAGAGGTGATCTTGACCCCGACTCATCTTGCAATTGTGATGGAATATGCATCTGGAGGAGAGCTCTTTGAACGGATCTGCAATGCCGGGCGGTTCAGCGAGGATGAGAACCTCCTACCATCTACTGAGTTAAGCTATATTGATCTGCAGGCACGTTTCTTCTTCCAGCAACTTATATCTGGTGTCAGCTATTGTCATGCAATGCAAGTATGTCATCGTGATTTGAAATTGGAGAATACATTGCTGGATGGAAGTCCTGCTCCTCGTTTGAAGATTTGTGATTTCGGATACTCGAAGTCTTCTGTGCTGCATTCACAACCAAAATCAACGGTTGGCACCCCTGCATATATTGCTCCTGAGGTGTTACTTAAGAAAGAGTATGATGGCAAGATTGCAGACGTGTGGTCATGTGGGGTGACTTTATATGTCATGTTGGTTGGTGCATACCCCTTTGAGGACCCCGAGGACCCAAAAAACTTCCGCAAAACAATTCAGCGAATCCTGAATGTACAGTACTCAATTCCCGATTATGTTCTTATCTCTCCCGAGTGTCGTCATCTGATCTCTAGGATTTTTGTTGCCGACCCAACTAAGAGGATTACAATTCCGGAGATAAGGAATCATGAGTGGTTTCTGAAGAATCTTCCAGCCGATCTCGTAGACGAAAGGGCAATGAATAACCAATACGAAGAGCCTGATCAACCAATGCAAACCAGTGAAGAAATCATGCAGATAATAGCTGAAGCTGGCCTTCCTGCTGCCGGGACACAGAGCCTCAACCAATACCTTACTGGCAGCCTTGATATCGATGACGACATGGAGGACGACGAAGAGAGTGATCCTGATCTTGATCTCGATATCGACAGCAGTGGAGAAGTTGTCTATGCAATATTGGATCTATTGGAGAGATCCTGA 1173 46.12 MDRSALTVGPGMDIPIMHDSDRYELVRDIGSGNFGIARLMRDKQTGELVAVKYIERGEKVSQLIDANVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDENLLPSTELSYIDLQARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPKNFRKTIQRILNVQYSIPDYVLISPECRHLISRIFVADPTKRITIPEIRNHEWFLKNLPADLVDERAMNNQYEEPDQPMQTSEEIMQIIAEAGLPAAGTQSLNQYLTGSLDIDDDMEDDEESDPDLDLDIDSSGEVVYAILDLLERS 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6183228 6186198 - ClCG02G005670.1 Cla02g00576 266702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00576 390 CDD STKc_SnRK2 22 296 - -
Cla02g00576 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Cla02g00576 390 Pfam Protein kinase domain 23 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00576 390 ProSiteProfiles Protein kinase domain profile. 23 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00576 390 PANTHER SERINE/THREONINE KINASE 14 376 - -
Cla02g00576 390 SMART serkin_6 23 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00576 390 Gene3D Phosphorylase Kinase; domain 1 1 102 - -
Cla02g00576 390 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2E-LIKE 14 376 - -
Cla02g00576 390 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Cla02g00576 390 SUPERFAMILY Protein kinase-like (PK-like) 15 321 IPR011009 -
Cla02g00576 390 Gene3D Transferase(Phosphotransferase) domain 1 103 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00576 K14498 SNRK2; serine/threonine-protein kinase SRK2 [EC:2.7.11.1] - csv:101209176 679.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00576 Cla-Chr2:6183228 Cla04g00282 Cla-Chr4:9092433 9.90E-10 dispersed
Cla04g00277 Cla-Chr4:8775270 Cla02g00576 Cla-Chr2:6183228 5.76E-15 dispersed
Cla01g01819 Cla-Chr1:33124298 Cla02g00576 Cla-Chr2:6183228 6.33E-175 transposed
Cla02g01262 Cla-Chr2:26575856 Cla02g00576 Cla-Chr2:6183228 0 transposed
Cla04g00077 Cla-Chr4:2382669 Cla02g00576 Cla-Chr2:6183228 1.17E-115 transposed
Cla04g00188 Cla-Chr4:6156978 Cla02g00576 Cla-Chr2:6183228 3.30E-75 transposed
Cla10g00206 Cla-Chr10:2398380 Cla02g00576 Cla-Chr2:6183228 2.35E-54 transposed
Cla02g00576 Cla-Chr2:6183228 Cla09g01718 Cla-Chr9:34410420 7.81E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g470 . . . . . . . . . Cmo11g01342 Cma02g00437 . Car02g00291 . . Cpe04g00263 . Bhi05g01154 . . . . . . Cla02g00576 . . . . . . Cone12ag1115 Cone8ag1156 Cone3ag0926 . Lsi10g00574 Csa07g00785 Chy11g00432 Cme01g00025 Blo04g00493 . . Bda14g00524 Bpe15g00890 . Bma03g00525 . . Cmo02g00439 . Cma11g01769 . Car11g01080 . . Cpe05g01226 Bhi10g02071 . . . . . . . . . . . . . Lsi11g01030 Csa02g01204 Chy01g00031 Cme11g00299
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000065 7 16 8 7 7 11 10 10 11 8 11 11 10 12 10 9 11 14 10 10 9 6 8 6 7 11 4 12 10 7 283
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80334 PF00069 Pkinase 2.30E-68 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00576 Cla_Chr02 FPKM 23.106173 24.47373 20.46386 23.336571 28.682072 32.326321 28.546831 21.892735 23.17701 21.234795