Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00594 ATGTGTCATGTAGCTGAGCCTCGGCCTTTACCAGCCCCGTTTGAATTCAAATCAAACTACGGAGCTCTCTTTATTGGCGCTCGAAATTCTCTCTCAAGAGCCCATCACTGGAAAATCGAAGGGAACGAGCTTCAGTTCAGCGACGGAATCCTACAACAGAAAATGGTGGAATCGAACCTGACTTACGAGGAATGCCGACGCCAGAGGTTGGAAGAGAATAAGAAGAGGATGGAAGAGCTTAATCTGAACAAACTTGCCGATGCTCTGAAATTTTCCAGCCCTAAATCCTCTCCGACCAAACAGCTAAAGCGTCCTCGTCAGCCACTCGATAAGTCGTCTTTCAGTGTGAGAAGGTCTAGCCGTTTTGCCGATAAGCCCCCTCCGAACTATAAGGAGGTGCCCATTGAACCACTTCCAGGTATAAGAAGGACTTATCAAAGGAGAGATTTGCTGAATCGGATTTATGCTTCACAAGAAGAAAGGCAATATGCTATTGACAGAGCAAGAGACCTTCAATCTAGCCTGGAATCTAGGTACCCCAGTTTTGTGAAGCCCATGCTTCAATCACATGTCACAGGGGGATTTTGGCTGGGTCTACCAGTTCACTTTTGCAAGACACACCTTCCCCTTGAGGATGAAATGCTAACTCTGGTTGACGAGGATGATAATGAGTTCCAAACAAAATACCTTGCCGATAAAACAGGTCTCAGTGGTGGTTGGAGAGGGTTTTCCATTGATCATCAGTTAGTAGATGGGGATGCTTTGGTGTTTCAGTTAACTAAGCCAACTGAATTCAAGGTATATATCATCAGAGCATACAATTTAGAAGACAGAGAAGATACCAATGAGGATTCTGATGTCACCCAATTGGAAAAAAGTAGCAAAAGAAATACCAAATCATCAGGGCATAAATCCAGGGCAAATAATTCTGAGGATAAAGGAGATAATGGTGAGGATTCAGCAGATGTCTCTCAGTTGGAAAAAAGTGGCAAAAAAACTACTAAATCATCAGGGCGTAAAAGCAGGGCAAATAAATCCAAAGATAAAGCAGATAACGGCGCGGATTTGGATGTCCCCGAGCTGGAAAAAAGTGGCAAAAGAATTACTAGATCATCAAGGCAAAAGAATTTTGTCAGTCTTAGCTCTCTCTGGACTGTTGTAATTCCAAACAAAAAGGGTTTAGGCATTTTCCGATCAGAAATGGCGTCTCTCATGGCGGTTCGGCGTGCTCGAACCCCTATTCTTATCTCCTCCTTCTTCAAGGTACGGTCTCCTCTCCCTTCTCGTTTCACCTTCACTTGTGGAAATCAGACAGATACCCTAATCAAAGCCCTAAGCACCTCGGCAATCCGTAACGATTTCTCAAATTTTCCTCCTCCGCCGCAACAACCTTCTTCGTCTGACCCTCGACATCGTCAAGCCCAGTGGGGCTCGCCGAGCCAGGTTCATCCTCCGAGTGGAAATTTTAATAATCAGTCGTTCTCGGAGTTTCAGAATCGCGATTATGTTCAACAGGGAAGCCCCAGTAATCAATTGAAGTATCGGAGTCAGAATCAGAGCCCTCAACCCAATCCTGGATTTTCCCGGCAGGGTCAGAGCTATAGTCAACCCGGTAACCCTAATTCGTGGAATCCTCCAAATCAAAGCTACCCGCAGTATCAAAATCCTTCGCAGGCGAACCCTCAAAATTTCAATTATCAGCAACAAAGAGGCCCTAACCAATGGAACAATCAAAAACAGGGATATCCACAATTTGGAAGGCCTGAACAGCGTAACCCACAAGTAGAGAATTCTAATCAGTTGAATAATCAGGCTGGGATTCAAAGGCAAGGTGCTCAAAATCAAGCACTAAATGCCCTTGTATCTCCTATTGACGAACTGCGGCGCCTTTGTGGAGAGGGGAAGATGAAAGAAGCTGTTGAATTATTGAAAGAAGGTGTTAAAGCTGATGCTGATTGTTTCCATTTGTTGTTTGAACTATGTGGGAAATCCAAGTCATTTGACAATGCTAAAGTAGTTCATGATTACTTTTTACAGTCAACTTGTAGAAGTGATCTGCAATTGAATAATAAAGTGCTTGAGATGTATGGGAGATGTGGAAGCATGAGTGATGCACGGAGAGTGTTCGACTATATGCCTGATAGAAATATTGATTCTTGGCATTTTATGATGAAAGGATATGCTGATAATGGATTGGGTGATGAGGGTCTGGAGTTATTTGAGAATATGAAGCAGCTAGGGTTGCAACCCGATTCACAAACTTTCCTTTTTGTTATGTCAGCTTGTGCTAGTGCGAATGCTGTGGAAGAAGGATTTCTGTACTTTGAGTCAATGAAAAATGATTATCATATTACCCCAGACATGGATCATTATTTGGGGCTTTTAGGTATTCTTGGAGAACCAGGACACATTAATGAGGCTTTCGAGTATGTTAAGAAACTGCCAATGGAGCCCACAGTTGAGGTATGGGAGACTTTAAAGAACTATGCTAGAATTCATGGAGATGTTGATCTTGAGGACTATGCAGAGGAGCTAATTGTTGATCTGGACCCGACAAAAGCTGTTTCTAATAAGATATCGACACCACCTCCCAAAAAACGGTCTGCAATTAGCATGCTTGATGGGAAGAACAGGATTAGTGAATTCAGAAATCCAACTCTCTACAAAGATGATGAAAAATTGAAGGCTTTGAAGGCAATGAAAGAACAAGGGTATGTGCCAGATACTAGATATGTTCTTCACGATATCGATCAAGAGGCCAAAGAGCAGGCATTGCTGTATCACAGTGAACGATTGGCAATCGCATATGGATTGATCAGTACTCCGGCACGAACGCCTCTTAGGATCATTAAGAACCTAAGGATCTGCGGTGATTGTCATAATGCCATCAAAATCATGTCTAGAATTGTTGGGAGAGAGTTAATTGTAAGGGACAACAAACGGTTCCATCATTTTAAGGATGCTTGA 2967 43.04 MCHVAEPRPLPAPFEFKSNYGALFIGARNSLSRAHHWKIEGNELQFSDGILQQKMVESNLTYEECRRQRLEENKKRMEELNLNKLADALKFSSPKSSPTKQLKRPRQPLDKSSFSVRRSSRFADKPPPNYKEVPIEPLPGIRRTYQRRDLLNRIYASQEERQYAIDRARDLQSSLESRYPSFVKPMLQSHVTGGFWLGLPVHFCKTHLPLEDEMLTLVDEDDNEFQTKYLADKTGLSGGWRGFSIDHQLVDGDALVFQLTKPTEFKVYIIRAYNLEDREDTNEDSDVTQLEKSSKRNTKSSGHKSRANNSEDKGDNGEDSADVSQLEKSGKKTTKSSGRKSRANKSKDKADNGADLDVPELEKSGKRITRSSRQKNFVSLSSLWTVVIPNKKGLGIFRSEMASLMAVRRARTPILISSFFKVRSPLPSRFTFTCGNQTDTLIKALSTSAIRNDFSNFPPPPQQPSSSDPRHRQAQWGSPSQVHPPSGNFNNQSFSEFQNRDYVQQGSPSNQLKYRSQNQSPQPNPGFSRQGQSYSQPGNPNSWNPPNQSYPQYQNPSQANPQNFNYQQQRGPNQWNNQKQGYPQFGRPEQRNPQVENSNQLNNQAGIQRQGAQNQALNALVSPIDELRRLCGEGKMKEAVELLKEGVKADADCFHLLFELCGKSKSFDNAKVVHDYFLQSTCRSDLQLNNKVLEMYGRCGSMSDARRVFDYMPDRNIDSWHFMMKGYADNGLGDEGLELFENMKQLGLQPDSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPDMDHYLGLLGILGEPGHINEAFEYVKKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNKISTPPPKKRSAISMLDGKNRISEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDA 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6446635 6454569 + ClCG02G005860.2 Cla02g00594 266720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00594 988 MobiDBLite consensus disorder prediction 88 136 - -
Cla02g00594 988 Pfam B3 DNA binding domain 182 272 IPR003340 GO:0003677
Cla02g00594 988 MobiDBLite consensus disorder prediction 341 369 - -
Cla02g00594 988 Gene3D - 156 274 IPR015300 -
Cla02g00594 988 Coils Coil 60 87 - -
Cla02g00594 988 ProSiteProfiles B3 DNA-binding domain profile. 182 273 IPR003340 GO:0003677
Cla02g00594 988 Pfam DYW family of nucleic acid deaminases 904 987 IPR032867 GO:0008270
Cla02g00594 988 Gene3D Tetratricopeptide repeat domain 625 781 IPR011990 GO:0005515
Cla02g00594 988 MobiDBLite consensus disorder prediction 505 597 - -
Cla02g00594 988 CDD B3_DNA 180 271 IPR003340 GO:0003677
Cla02g00594 988 Pfam PPR repeat family 716 763 IPR002885 -
Cla02g00594 988 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 402 987 - -
Cla02g00594 988 MobiDBLite consensus disorder prediction 279 372 - -
Cla02g00594 988 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 716 750 IPR002885 -
Cla02g00594 988 SUPERFAMILY DNA-binding pseudobarrel domain 175 272 IPR015300 -
Cla02g00594 988 TIGRFAM PPR: pentatricopeptide repeat domain 719 752 IPR002885 -
Cla02g00594 988 PANTHER OS07G0578800 PROTEIN-RELATED 402 987 IPR045215 GO:0003723|GO:0009451
Cla02g00594 988 SMART B3_2 182 273 IPR003340 GO:0003677
Cla02g00594 988 MobiDBLite consensus disorder prediction 452 493 - -
Cla02g00594 988 MobiDBLite consensus disorder prediction 467 493 - -
Cla02g00594 988 MobiDBLite consensus disorder prediction 305 334 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00594 Cla-Chr2:6446635 Cla06g01428 Cla-Chr6:27860660 3.92E-07 dispersed
Cla03g01048 Cla-Chr3:20075516 Cla02g00594 Cla-Chr2:6446635 2.05E-114 transposed
Cla07g01309 Cla-Chr7:30258668 Cla02g00594 Cla-Chr2:6446635 1.31E-147 transposed
Cla02g00594 Cla-Chr2:6446635 Cla05g01066 Cla-Chr5:10999675 6.32E-37 wgd
Cla02g00594 Cla-Chr2:6446635 Cla08g01552 Cla-Chr8:28209545 9.90E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60612 PF14432 DYW_deaminase 7.10E-33 CL0109 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00594 - - mcha:111007809 1032.32