Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla02g00594 | ATGTGTCATGTAGCTGAGCCTCGGCCTTTACCAGCCCCGTTTGAATTCAAATCAAACTACGGAGCTCTCTTTATTGGCGCTCGAAATTCTCTCTCAAGAGCCCATCACTGGAAAATCGAAGGGAACGAGCTTCAGTTCAGCGACGGAATCCTACAACAGAAAATGGTGGAATCGAACCTGACTTACGAGGAATGCCGACGCCAGAGGTTGGAAGAGAATAAGAAGAGGATGGAAGAGCTTAATCTGAACAAACTTGCCGATGCTCTGAAATTTTCCAGCCCTAAATCCTCTCCGACCAAACAGCTAAAGCGTCCTCGTCAGCCACTCGATAAGTCGTCTTTCAGTGTGAGAAGGTCTAGCCGTTTTGCCGATAAGCCCCCTCCGAACTATAAGGAGGTGCCCATTGAACCACTTCCAGGTATAAGAAGGACTTATCAAAGGAGAGATTTGCTGAATCGGATTTATGCTTCACAAGAAGAAAGGCAATATGCTATTGACAGAGCAAGAGACCTTCAATCTAGCCTGGAATCTAGGTACCCCAGTTTTGTGAAGCCCATGCTTCAATCACATGTCACAGGGGGATTTTGGCTGGGTCTACCAGTTCACTTTTGCAAGACACACCTTCCCCTTGAGGATGAAATGCTAACTCTGGTTGACGAGGATGATAATGAGTTCCAAACAAAATACCTTGCCGATAAAACAGGTCTCAGTGGTGGTTGGAGAGGGTTTTCCATTGATCATCAGTTAGTAGATGGGGATGCTTTGGTGTTTCAGTTAACTAAGCCAACTGAATTCAAGGTATATATCATCAGAGCATACAATTTAGAAGACAGAGAAGATACCAATGAGGATTCTGATGTCACCCAATTGGAAAAAAGTAGCAAAAGAAATACCAAATCATCAGGGCATAAATCCAGGGCAAATAATTCTGAGGATAAAGGAGATAATGGTGAGGATTCAGCAGATGTCTCTCAGTTGGAAAAAAGTGGCAAAAAAACTACTAAATCATCAGGGCGTAAAAGCAGGGCAAATAAATCCAAAGATAAAGCAGATAACGGCGCGGATTTGGATGTCCCCGAGCTGGAAAAAAGTGGCAAAAGAATTACTAGATCATCAAGGCAAAAGAATTTTGTCAGTCTTAGCTCTCTCTGGACTGTTGTAATTCCAAACAAAAAGGGTTTAGGCATTTTCCGATCAGAAATGGCGTCTCTCATGGCGGTTCGGCGTGCTCGAACCCCTATTCTTATCTCCTCCTTCTTCAAGGTACGGTCTCCTCTCCCTTCTCGTTTCACCTTCACTTGTGGAAATCAGACAGATACCCTAATCAAAGCCCTAAGCACCTCGGCAATCCGTAACGATTTCTCAAATTTTCCTCCTCCGCCGCAACAACCTTCTTCGTCTGACCCTCGACATCGTCAAGCCCAGTGGGGCTCGCCGAGCCAGGTTCATCCTCCGAGTGGAAATTTTAATAATCAGTCGTTCTCGGAGTTTCAGAATCGCGATTATGTTCAACAGGGAAGCCCCAGTAATCAATTGAAGTATCGGAGTCAGAATCAGAGCCCTCAACCCAATCCTGGATTTTCCCGGCAGGGTCAGAGCTATAGTCAACCCGGTAACCCTAATTCGTGGAATCCTCCAAATCAAAGCTACCCGCAGTATCAAAATCCTTCGCAGGCGAACCCTCAAAATTTCAATTATCAGCAACAAAGAGGCCCTAACCAATGGAACAATCAAAAACAGGGATATCCACAATTTGGAAGGCCTGAACAGCGTAACCCACAAGTAGAGAATTCTAATCAGTTGAATAATCAGGCTGGGATTCAAAGGCAAGGTGCTCAAAATCAAGCACTAAATGCCCTTGTATCTCCTATTGACGAACTGCGGCGCCTTTGTGGAGAGGGGAAGATGAAAGAAGCTGTTGAATTATTGAAAGAAGGTGTTAAAGCTGATGCTGATTGTTTCCATTTGTTGTTTGAACTATGTGGGAAATCCAAGTCATTTGACAATGCTAAAGTAGTTCATGATTACTTTTTACAGTCAACTTGTAGAAGTGATCTGCAATTGAATAATAAAGTGCTTGAGATGTATGGGAGATGTGGAAGCATGAGTGATGCACGGAGAGTGTTCGACTATATGCCTGATAGAAATATTGATTCTTGGCATTTTATGATGAAAGGATATGCTGATAATGGATTGGGTGATGAGGGTCTGGAGTTATTTGAGAATATGAAGCAGCTAGGGTTGCAACCCGATTCACAAACTTTCCTTTTTGTTATGTCAGCTTGTGCTAGTGCGAATGCTGTGGAAGAAGGATTTCTGTACTTTGAGTCAATGAAAAATGATTATCATATTACCCCAGACATGGATCATTATTTGGGGCTTTTAGGTATTCTTGGAGAACCAGGACACATTAATGAGGCTTTCGAGTATGTTAAGAAACTGCCAATGGAGCCCACAGTTGAGGTATGGGAGACTTTAAAGAACTATGCTAGAATTCATGGAGATGTTGATCTTGAGGACTATGCAGAGGAGCTAATTGTTGATCTGGACCCGACAAAAGCTGTTTCTAATAAGATATCGACACCACCTCCCAAAAAACGGTCTGCAATTAGCATGCTTGATGGGAAGAACAGGATTAGTGAATTCAGAAATCCAACTCTCTACAAAGATGATGAAAAATTGAAGGCTTTGAAGGCAATGAAAGAACAAGGGTATGTGCCAGATACTAGATATGTTCTTCACGATATCGATCAAGAGGCCAAAGAGCAGGCATTGCTGTATCACAGTGAACGATTGGCAATCGCATATGGATTGATCAGTACTCCGGCACGAACGCCTCTTAGGATCATTAAGAACCTAAGGATCTGCGGTGATTGTCATAATGCCATCAAAATCATGTCTAGAATTGTTGGGAGAGAGTTAATTGTAAGGGACAACAAACGGTTCCATCATTTTAAGGATGCTTGA | 2967 | 43.04 | MCHVAEPRPLPAPFEFKSNYGALFIGARNSLSRAHHWKIEGNELQFSDGILQQKMVESNLTYEECRRQRLEENKKRMEELNLNKLADALKFSSPKSSPTKQLKRPRQPLDKSSFSVRRSSRFADKPPPNYKEVPIEPLPGIRRTYQRRDLLNRIYASQEERQYAIDRARDLQSSLESRYPSFVKPMLQSHVTGGFWLGLPVHFCKTHLPLEDEMLTLVDEDDNEFQTKYLADKTGLSGGWRGFSIDHQLVDGDALVFQLTKPTEFKVYIIRAYNLEDREDTNEDSDVTQLEKSSKRNTKSSGHKSRANNSEDKGDNGEDSADVSQLEKSGKKTTKSSGRKSRANKSKDKADNGADLDVPELEKSGKRITRSSRQKNFVSLSSLWTVVIPNKKGLGIFRSEMASLMAVRRARTPILISSFFKVRSPLPSRFTFTCGNQTDTLIKALSTSAIRNDFSNFPPPPQQPSSSDPRHRQAQWGSPSQVHPPSGNFNNQSFSEFQNRDYVQQGSPSNQLKYRSQNQSPQPNPGFSRQGQSYSQPGNPNSWNPPNQSYPQYQNPSQANPQNFNYQQQRGPNQWNNQKQGYPQFGRPEQRNPQVENSNQLNNQAGIQRQGAQNQALNALVSPIDELRRLCGEGKMKEAVELLKEGVKADADCFHLLFELCGKSKSFDNAKVVHDYFLQSTCRSDLQLNNKVLEMYGRCGSMSDARRVFDYMPDRNIDSWHFMMKGYADNGLGDEGLELFENMKQLGLQPDSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPDMDHYLGLLGILGEPGHINEAFEYVKKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNKISTPPPKKRSAISMLDGKNRISEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDA | 988 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 6446635 | 6454569 | + | ClCG02G005860.2 | Cla02g00594 | 266720 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla02g00594 | 988 | MobiDBLite | consensus disorder prediction | 88 | 136 | - | - | |
Cla02g00594 | 988 | Pfam | B3 DNA binding domain | 182 | 272 | IPR003340 | GO:0003677 | |
Cla02g00594 | 988 | MobiDBLite | consensus disorder prediction | 341 | 369 | - | - | |
Cla02g00594 | 988 | Gene3D | - | 156 | 274 | IPR015300 | - | |
Cla02g00594 | 988 | Coils | Coil | 60 | 87 | - | - | |
Cla02g00594 | 988 | ProSiteProfiles | B3 DNA-binding domain profile. | 182 | 273 | IPR003340 | GO:0003677 | |
Cla02g00594 | 988 | Pfam | DYW family of nucleic acid deaminases | 904 | 987 | IPR032867 | GO:0008270 | |
Cla02g00594 | 988 | Gene3D | Tetratricopeptide repeat domain | 625 | 781 | IPR011990 | GO:0005515 | |
Cla02g00594 | 988 | MobiDBLite | consensus disorder prediction | 505 | 597 | - | - | |
Cla02g00594 | 988 | CDD | B3_DNA | 180 | 271 | IPR003340 | GO:0003677 | |
Cla02g00594 | 988 | Pfam | PPR repeat family | 716 | 763 | IPR002885 | - | |
Cla02g00594 | 988 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 402 | 987 | - | - | |
Cla02g00594 | 988 | MobiDBLite | consensus disorder prediction | 279 | 372 | - | - | |
Cla02g00594 | 988 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 716 | 750 | IPR002885 | - | |
Cla02g00594 | 988 | SUPERFAMILY | DNA-binding pseudobarrel domain | 175 | 272 | IPR015300 | - | |
Cla02g00594 | 988 | TIGRFAM | PPR: pentatricopeptide repeat domain | 719 | 752 | IPR002885 | - | |
Cla02g00594 | 988 | PANTHER | OS07G0578800 PROTEIN-RELATED | 402 | 987 | IPR045215 | GO:0003723|GO:0009451 | |
Cla02g00594 | 988 | SMART | B3_2 | 182 | 273 | IPR003340 | GO:0003677 | |
Cla02g00594 | 988 | MobiDBLite | consensus disorder prediction | 452 | 493 | - | - | |
Cla02g00594 | 988 | MobiDBLite | consensus disorder prediction | 467 | 493 | - | - | |
Cla02g00594 | 988 | MobiDBLite | consensus disorder prediction | 305 | 334 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g00594 | Cla-Chr2:6446635 | Cla06g01428 | Cla-Chr6:27860660 | 3.92E-07 | dispersed | |
Cla03g01048 | Cla-Chr3:20075516 | Cla02g00594 | Cla-Chr2:6446635 | 2.05E-114 | transposed | |
Cla07g01309 | Cla-Chr7:30258668 | Cla02g00594 | Cla-Chr2:6446635 | 1.31E-147 | transposed | |
Cla02g00594 | Cla-Chr2:6446635 | Cla05g01066 | Cla-Chr5:10999675 | 6.32E-37 | wgd | |
Cla02g00594 | Cla-Chr2:6446635 | Cla08g01552 | Cla-Chr8:28209545 | 9.90E-66 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60612 | PF14432 | DYW_deaminase | 7.10E-33 | CL0109 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla02g00594 | - | - | mcha:111007809 | 1032.32 |