Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00612 ATGGAACACAGCTTGTTATTAAAATTATCTTTTCAAGAAAATGGGCAAAAGAGTAATAACGCCCGATGTTATGAGGGCAAGATTGGAATAAAGCAACCTTCACCTCTTCGAGACTTTCTTCTTCTGCCTTTCTGCGTTGCTCTGCGGAATACGGGGGAAGAAGTACGTCATCGGCTCCGACGACCTTTAAACTGCCTTAGTTCGGCGACTCACGGTGGTCATTCGTGCCCTGGTTTACATCATCACCTAGCTATGGAGATTGCTCCGGCGGCTGCGCCTTCGATCGACAGAGATGCTGCCAACGATACCGCCTCTGTTGATGCAGTTCAAGCATCGTCTTCATCGCCGGATTCTGTACCAGGGAACAAGGCGAACTTGTCTACGTCTTTTCCTGGACCTAAGTATGATGACGATGAAGAGGAAGAGGACGTCTGCCGGATCTGTAGGAACCCTAGAGATGCGGATAACCCGCTAAGTTATCCCTGCGCTTGCAGCGGCAGCATCAAGTTTGTTCACCAGGATTGTCTCCTTCAATGGCTGAATCACAGCAACGCCCGTCAGTGCGAGGTTTGCAAACATGCATTTTCCTTCTCCCCTGTTTATGCCGAGAATGCTCCATCAAGGCTACCTTTTCAGGAATTTATTTTTGGAATAGCAATGAAAGCTTGCCATGTCCTGCAATTCTTTTTACGTTTAAGTTTTGTGCTCTCTGTTTGGCTCCTCATCATACCTTTCATTACATTTTGGATATGGCGGTTGGCTTTTGTGAGAAGTTTTGGGGAAGCTCAGAGATTATTCTTGAGTCACTTGTCTGCTACCGTTGTTCTTACTGATTGTCTTCATGGCTTCCTACTTTCTGCTAGCATTGTATTTATATTCCTTGGAGCTACCTCCTTGAGAGATTACTTCAGGCATTTACGGGAACTTGGAGGTCAGGATGGCGAGCGAGAAGATGATGCAGATCGAAATGGAGCTCGTGCGGTAAGAAGACCTCCGGGACAAGCTAATAGAAATTTTGCTGGTGACGCAAATGGTGAAGATGCGGGTGGAGCCCTAGTACTTGCTGGAGCAGGTCAAATGATTAGGAGGAATGCAGAAAATGTTGCTGCTCGATGGGAGATGCAGGCTGCTCGTCTTGAAGCTCACGTCGAACAGATGTTTGATGTGGATGATGCTGATGGTGCAGAAGATGTGCCCTTTGATGAGCTTGTTGGCATGCAGGGTCCTGTGTTTCACTTAGTTGAGAATGCATTCACAGTTTTAGCCAGCAATATGATATTTCTTGGTGTTGTTATCTTTGTGCCCTTTACACTAGGTCGGATCATACTTCATTACGTATCATGGCTTTTCTCTTCAGCCAGTGGTCCAGTTTTCTCAACAGTGATGCCACTTACAGAGTCAGCTCTCTCGTTGGCAAATATTACATTGAAAAATGCATTGACAGCTGTTGCAAATTTGTCATCAGATGGTAAAGAAAGTGGACTACTTGATCAGGTTGCAGAAATGTTGGAAGTCAACTCCAGTACGCTAAACAATGTCTCAAACAACATAACGGCTCCACTTTCGGTTGATCTTTTGAAAGGGGTAGCCACTGGAGGTTCGAGGCTTTCTGATGTTACAACTCTTGCTGTAGGCTACATATTTATATTTTCTTTAGTTTTCTTCTATCTTGGGACTATTGCTTTGATTCGATACACACGAGGAGAGCCTTTGACTATGGGGAGGTTGTATGGCATTGCATCTGTAGCCGAGGCCATCCCTTCTCTCCTTAGGCAGTTCATGGCAGCAATGAGGCATTTGATGACCATGGTTAAGGTTGCTTTCCTATTGGTCATAGAACTTGGGGTATTCCCCTTGATGTGTGGTTGGTGGCTTGATATTTGTACTGTAAGGATGTTTGGAAAGTCAATGGCTCAGCGTGTTCAGTTCTTTTCAATTTCTCCTCTAGCAAGCTCATTGGTTCACTGGGCTGTTGGCATTGTATATATGCTACAAATAAGCATATTTGTCAATCTCCTCCGAGGGGTTTTGCGCAGTGGAGTTTTGTACTTTCTTCGCGATCCAGCTGACCCAAATTATAACCCTTTTCGAGATTTAATCGACGATCCTATGCACAAGCATGCTCGCAGGGTTCTTCTATCTGTCGCAGTGTATGGAAGTTTAATTGTAATGCTGGTGTTCTTACCTGTCAAACTTGCTATGAGGATGGTGCCCTCCATTTTTCCTCTTGATATATCGGTATCGGATCCCTTCACAGAGATTCCAGCTGACATGCTTCTGTTTCAAATATGCATTCCTTTTGCTATCGAGCATTTTAAATTGAGAACAACAATCAAATCCCTTCTTCACTGCTGGTTTACTGTAGTCGGTTGGGCCCTTGGTTTAACAGATTATTTACTTCCCAGAACTGAAGAAAATGTCGGCCAGGAAAATGGGAATGGAGAGCCTGGGTTGCAAGAAGAACTGCAGGTGGTACACCTAGGTGGACAGGATCAGGCTTTGGTGGCTCATAATGCAGCTAACGACCCAAATCAAGTTCCTGCATCTGGAAACTTGAGTAATGAGGAGTATGATAACGAAGAGCAGACTGATTCAGAGAGGTATAGCTTTGCTCTCCGGATTGTCCTTTTGTTGGTTGTGGCATGGATGACTCTTCTTGTCTTCAACTCAGCATTGATAGTGGTACCAACTTCACTTGGACGGGCACTTTTCAATGCCATTCCGCTTCTTCCCATCACACATGGAATCAAGTGCAATGATATGTATGCTTTTGTCATCGGGAGCTACGTTATTTGGACGGCAATAGCTGGTGCCAGATATTCCATTGAATATGTCAGAGCAAGGAGGGTGACAGTTTTGTTGGGCCAGATATGGAAATGGTTTGCCATTGTCGTCAAGAGTTCTGCACTTTTGTCAATTTGGATCTTTCTCATTCCAGTATTGATTGGCTTGTTATTTGAGCTTCTGGTCATCGTGCCTATGCGAGTTCCGGTGGATGAAAGCCCAGTTTTCCTCTTGTATCAGGATTGGGCATTGGGCTTAATTTTTCTTAAGATATGGACTAGACTGGTAATGTTAGATCATATGATACCACTGGTGGATGACAGTTGGAGGGTAAAGTTTGAAAGAGTTAGAGAAGATGGCTTCTCCAGGCTGCAAGGACTCTGGGTTCTGCGGGAAATAGTTGTGCCAATTATAATGAAGTTACTGACAGCACTATGCGTACCATATGTACTAGCTAGAGGAGTATTTCCCGTATTTGGGTACCCGCTGATCGTCAACTCGGCTGTTTATCGATTTGCTTGGATTGGATGCCTTTGTGTTAGCATGTTGTATTTCTGTGCCAAGAGATTTCATGTTTGGTTCACCAACCTTCACAATTCCATTCGCGACGATCGTTATCTCATTGGTCGTCGACTCCATAACTTCGGTGAAGACTCCGAAGAGAAGCAAACTGATGTGGGGACTTCATCCGAGACACAAAATGCACATCTGCTGGGCACCGGCCATGCAGCAGTGGCTGGTGAAGGATTGCGGCTGAGACGTGTGGTTGGTAACTGA 3561 44.99 MEHSLLLKLSFQENGQKSNNARCYEGKIGIKQPSPLRDFLLLPFCVALRNTGEEVRHRLRRPLNCLSSATHGGHSCPGLHHHLAMEIAPAAAPSIDRDAANDTASVDAVQASSSSPDSVPGNKANLSTSFPGPKYDDDEEEEDVCRICRNPRDADNPLSYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPSRLPFQEFIFGIAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHLSATVVLTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQDGEREDDADRNGARAVRRPPGQANRNFAGDANGEDAGGALVLAGAGQMIRRNAENVAARWEMQAARLEAHVEQMFDVDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFTLGRIILHYVSWLFSSASGPVFSTVMPLTESALSLANITLKNALTAVANLSSDGKESGLLDQVAEMLEVNSSTLNNVSNNITAPLSVDLLKGVATGGSRLSDVTTLAVGYIFIFSLVFFYLGTIALIRYTRGEPLTMGRLYGIASVAEAIPSLLRQFMAAMRHLMTMVKVAFLLVIELGVFPLMCGWWLDICTVRMFGKSMAQRVQFFSISPLASSLVHWAVGIVYMLQISIFVNLLRGVLRSGVLYFLRDPADPNYNPFRDLIDDPMHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMVPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLHCWFTVVGWALGLTDYLLPRTEENVGQENGNGEPGLQEELQVVHLGGQDQALVAHNAANDPNQVPASGNLSNEEYDNEEQTDSERYSFALRIVLLLVVAWMTLLVFNSALIVVPTSLGRALFNAIPLLPITHGIKCNDMYAFVIGSYVIWTAIAGARYSIEYVRARRVTVLLGQIWKWFAIVVKSSALLSIWIFLIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMIPLVDDSWRVKFERVREDGFSRLQGLWVLREIVVPIIMKLLTALCVPYVLARGVFPVFGYPLIVNSAVYRFAWIGCLCVSMLYFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEDSEEKQTDVGTSSETQNAHLLGTGHAAVAGEGLRLRRVVGN 1186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6722504 6729120 + ClCG02G006070.1 Cla02g00612 266738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00612 1186 MobiDBLite consensus disorder prediction 841 860 - -
Cla02g00612 1186 MobiDBLite consensus disorder prediction 100 138 - -
Cla02g00612 1186 CDD RING_CH-C4HC3_MARCH6 144 193 - -
Cla02g00612 1186 SMART ringv_2 144 192 IPR011016 GO:0008270
Cla02g00612 1186 MobiDBLite consensus disorder prediction 105 129 - -
Cla02g00612 1186 MobiDBLite consensus disorder prediction 313 343 - -
Cla02g00612 1186 SUPERFAMILY RING/U-box 139 195 - -
Cla02g00612 1186 PANTHER SSM4 PROTEIN 132 1133 - -
Cla02g00612 1186 MobiDBLite consensus disorder prediction 841 856 - -
Cla02g00612 1186 Pfam RING-variant domain 145 191 IPR011016 GO:0008270
Cla02g00612 1186 Coils Coil 362 382 - -
Cla02g00612 1186 PANTHER ZINC FINGER, RING-CH-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 132 1133 - -
Cla02g00612 1186 ProSiteProfiles Zinc finger RING-CH-type profile. 137 198 IPR011016 GO:0008270
Cla02g00612 1186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 203 IPR013083 -
Cla02g00612 1186 ProSiteProfiles Zinc finger RING-type profile. 145 192 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00612 K10661 MARCH6, DOA10; E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27] - csv:101222781 2098.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00612 Cla-Chr2:6722504 Cla06g00513 Cla-Chr6:6198219 4.31E-13 dispersed
Cla02g00612 Cla-Chr2:6722504 Cla04g01196 Cla-Chr4:27120786 1.52E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g385 . Blo15g00755 Bda06g01078 . Bpe07g00369 . . Bma12g00433 Cmo19g00615 Cmo11g01375 . . . . . Cpe04g00289 Cpe15g00481 Bhi05g01074 . . . . . . Cla02g00612 Cam02g0641 Cec02g0640 Cco02g0661 Clacu02g0645 Cmu02g0640 Cre02g0964 . . Cone3ag0981 Cone10ag1001 . Csa07g00748 . Cme01g00060 . . . . . . . . . . . Cma11g01740 Cma19g00597 . . . . . . . . . . . . . . . . . . . . Chy01g00063 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005956 2 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00612 Cla_Chr02 FPKM 37.899017 38.181839 65.875801 64.279175 35.022064 33.745419 35.549507 26.65592 25.219099 23.415821