Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00613 ATGGCTCAGGTTCCACCTCAACCTCAAGTTCCCAACTCCGGTGCCGATCCGGCCGCCAATGGAGCGGCAAATCAGCATGTCACGACCTCCTTGTATGTTGGAGATCTTGACGTCAACGTCACCGATTCTCAGCTCTACGATCTTTTTAATCAGGTGGGGCAGGTGGTTTCTGTTAGGGTTTGCAGGGATTTGACCACCCGTCGATCGCTTGGTTATGGCTATGTCAATTACAGCAACCCAGTTGATGGAATTATGACTTCTTGTTGTTGCTTGCTTCTTTTTGGGAATAACAACGCATGTCTGTTTTACTGGGCTTGGATTCTTGTAGTTACGTCAAGGGCATTAGATATGCTAAACTTCACCCCTTTGAATGGGACTCCCATTAGAGTCATGTATTCACATCGTGACCCTAGCGTGCGGAAAAGTGGGTCTGGAAATATTTTTATCAAGAACTTGGACAAGGCAATTGATCACAAAGCTCTGCACGATACCTTTTCTGCATTTGGAAGCATTCTATCTTGCAAGGTTGCTACAGATTCATCTGGCCAGTCCAAAGGCTTTGGTTTTGTGCAATTTGACACTGAGGAAGCTGCCTTAAAAGCTATAGAAAAGTTGAATGGTATGCTGCTAAATGACAAGCAGGTGTTTGTGGGACCTTTCCTTCGCAAGCAAGAAAGAGAAAGTGTCAGTGAGAAAACGAAATTTAATAATGTTTTTGTTAAGAATCTAGCAGAAACTACATCTGAAGAAGATTTGAAGAATATGTTTGGGGAGTTTGGACCAATCACCAGTGTTGTGGTGATGAGGGATGGGGAAGGAAAATCAAAATGCTTTGGCTTTGTTAACTTTGAGAATGCGGATGATGCTGCTAGATCTGTTGAAGCCCTCAATGGAAAGAAGGTTGATGGGAAAGAGTGGTATGTTGGAAAAGCCCAGAAGAAATCTGAAAGGGAAGTTGAACTGAAAAATCGATTTGAGCAGAGTGTAAAAGAAGCTGCTGACAAGTATCAAGGTGCAAACTTGTATGTTAAGAATTTAGATGATAGCATTGACGATGAAAAGCTGAAGGAGTTATTCACTGGGTTTGGAACCATTACCTCATGCAAGGTTATGCGTGACCCCAATGGAATCAGTAGAGGATCTGGCTTTGTTGCATTCTCAACTCCAGAAGAGGCTGGCAGAGCTCTTGCAGAGATGAATGGAAGAATGATTGTGAGCAAGCCTCTTTATGTTGCACTTGCACAGAGGAAGGAAGATAGAAGAGCTAGGTTGCAGGCACAATTTTCCCAAATGCAGCCAATGGCAATGGCATCTTCAGTTGCTCCTCGTGGCATGCCAATGTATCCTCCAGGTGGTCCAGGTATTGGACAACAGATATTCTATGGCCAAGCTCCACCTACTATTATTTCCTCCCAGCCCGGCTTTGGTTATCAACAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCCATGCCAAATTTCTTTGTACCAATGGTTCAGCAGGGCCAGCAAGGGCAAAGATCCGGTGGCAGGCGTGCTGGTGCCATTCAGCAAACCCAGCAGCCTGTTCCTTTGATGCAGCAGCAGATGCTACCAAGAGGACGTGTCTACCGTTATCCTCCTGGACGTGGACTGCCTGATCTTCCCATGCCTGGTGTTGCTGGAGGCATGTTCTCTGTTCCATATGAGATGGGTGGAATGCCACCGCGGGATGCAGTCCACCCTCAACCAGTTCCTGTGGGTGCTTTGGCTTCTGCTCTTGCAAATGCAACTCCAGACCAGCAGAGAACGATGCTGGGGGAAAATCTTTATCCACTTGTGGAACAGCTAGAGCCTGATAATGCGGCCAAGGTAACAGGAATGCTATTGGAAATGGACCAAACTGAGGTTCTTCACTTGCTGGAGTCGCCTGAAGCTCTGAAAGCCAAGGTGGCGGAGGCGATGGAGGTTTTAAGAAGTGTCGCTCAGCAGACTGGCAATGCAGCTGATCAATTGGCTTCACTATCTCTGACTGACAACCTTGATTCCTAA 2034 46.51 MAQVPPQPQVPNSGADPAANGAANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPVDGIMTSCCCLLLFGNNNACLFYWAWILVVTSRALDMLNFTPLNGTPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAADKYQGANLYVKNLDDSIDDEKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSTPEEAGRALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQTGNAADQLASLSLTDNLDS 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6731074 6735001 - ClCG02G006080.2 Cla02g00613 266739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00613 677 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 214 IPR000504 GO:0003723
Cla02g00613 677 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 409 IPR000504 GO:0003723
Cla02g00613 677 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 306 IPR000504 GO:0003723
Cla02g00613 677 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 82 IPR000504 GO:0003723
Cla02g00613 677 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 112 653 IPR006515 GO:0003723
Cla02g00613 677 Gene3D - 324 424 IPR012677 -
Cla02g00613 677 CDD RRM3_I_PABPs 235 314 - -
Cla02g00613 677 SUPERFAMILY RNA-binding domain, RBD 17 82 IPR035979 GO:0003676
Cla02g00613 677 SMART rrm1_1 237 309 IPR000504 GO:0003723
Cla02g00613 677 SMART rrm1_1 30 103 IPR000504 GO:0003723
Cla02g00613 677 SMART rrm1_1 146 218 IPR000504 GO:0003723
Cla02g00613 677 SMART rrm1_1 340 412 IPR000504 GO:0003723
Cla02g00613 677 MobiDBLite consensus disorder prediction 1 21 - -
Cla02g00613 677 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 236 313 IPR000504 GO:0003723
Cla02g00613 677 PANTHER RNA BINDING PROTEIN 19 659 - -
Cla02g00613 677 PANTHER POLYADENYLATE-BINDING PROTEIN 2 19 659 - -
Cla02g00613 677 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 135 IPR000504 GO:0003723
Cla02g00613 677 SUPERFAMILY PABC (PABP) domain 521 666 IPR036053 GO:0003723
Cla02g00613 677 SMART poly_2 592 655 IPR002004 GO:0003723
Cla02g00613 677 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 580 657 IPR002004 GO:0003723
Cla02g00613 677 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 217 IPR000504 GO:0003723
Cla02g00613 677 Gene3D - 575 659 - -
Cla02g00613 677 SMART rrm2_1 237 309 IPR003954 GO:0003676
Cla02g00613 677 SMART rrm2_1 340 412 IPR003954 GO:0003676
Cla02g00613 677 SMART rrm2_1 146 218 IPR003954 GO:0003676
Cla02g00613 677 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 416 IPR000504 GO:0003723
Cla02g00613 677 Pfam Poly-adenylate binding protein, unique domain 588 652 IPR002004 GO:0003723
Cla02g00613 677 CDD RRM4_I_PABPs 338 416 - -
Cla02g00613 677 Gene3D - 146 225 IPR012677 -
Cla02g00613 677 Gene3D - 2 145 IPR012677 -
Cla02g00613 677 Gene3D - 226 323 IPR012677 -
Cla02g00613 677 CDD RRM2_I_PABPs 143 219 IPR045305 -
Cla02g00613 677 SUPERFAMILY RNA-binding domain, RBD 117 226 IPR035979 GO:0003676
Cla02g00613 677 CDD RRM1_I_PABPs 30 137 - -
Cla02g00613 677 SUPERFAMILY RNA-binding domain, RBD 236 420 IPR035979 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00613 Cla-Chr2:6731074 Cla10g01863 Cla-Chr10:34538337 2.83E-07 dispersed
Cla05g01264 Cla-Chr5:14961372 Cla02g00613 Cla-Chr2:6731074 3.79E-06 dispersed
Cla02g00412 Cla-Chr2:4050062 Cla02g00613 Cla-Chr2:6731074 3.06E-06 transposed
Cla08g00733 Cla-Chr8:19630576 Cla02g00613 Cla-Chr2:6731074 0 transposed
Cla10g01135 Cla-Chr10:25846632 Cla02g00613 Cla-Chr2:6731074 2.99E-10 transposed
Cla02g00613 Cla-Chr2:6731074 Cla05g01087 Cla-Chr5:11241152 1.98E-73 wgd
Cla02g00613 Cla-Chr2:6731074 Cla09g01707 Cla-Chr9:34204193 1.45E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00613 K13126 - csv:101223017 1179.85