Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00622 ATGGCCAAACCCTCACCTTTTGCCCTACTATTTATCTCTAATCTCTTTCTCTTCTCTTTCTTCTTCACGGCGGCGATCGTAGTGGATGAACCGTCATCTAAAACCGATTCTCAAGTAAAACATACCAACACATTCTTTTTCTACCCTTGGTATACTCCTCCGCCACCGGAATCTCCACCTCCACCTCCTCTGCTTCCTCCTCCACCACCTCCACCTCCGCCTCCTCTACCACCACTTCCACCTTCACCTCCACCTCCATCTCCTCCTCCCCCTCCGCCTCCTCTTCCATCACCTCCACCTCCTCCTCCTCCTTATTGTGCCACACCATCACCACCACCCCCACTGCCACCTTCACCTCCACCACCGCCCCCTCCACCTCCACCTCCACCTCCGCCGCCATCTCGAACCCAAATTGCATTAAAGGCCATAAACAACTTCAGACAGAGAATTGAGTTTGACCCAAATAATGTCACAGACACATGGAAAGGGCCAGACCCTTGCAAGTACAAAGGATTCATTTGCGACACAGTTCCCGATTACAAAAGTGAGGCAGTGGCTGGAGTGAGCTTCAACAACTTCGAATTCGGCGGTTCTAAGCTGATTCTAAATGGGTTCATCGATCAGTTGCCAGACATCACTTTCTTCCATGCTAACTCAAACAAATTCACCGGCACCGTCCCTGAGCTCATCTCCGATCTCAGATTCTTCTACGAGCTCGATCTTAGTAACAACATATTCACCGGCGAGTTTCCAAAGCAAGTCCTCCGCGCCACCAATCTAACGTTCTTGGACATTCGCTTCAACAGCTTCTCTGGTCCGGTCCCGGAGAAGCTGTTTGATATGGACATTATTTCTGCTATCTTCCTCAATAACAACAAGTTTAACCACTACATTCCGGCTAACCTCGGCAACACCCCTGCTCGGTACCTCACCTTCACAAGCAACGAGTTCACCGGCCCCATCCCAAAAAGCATCGGAATCGGGAAAACAAAGAAGAACCTAATCGAAGTCCTCTTCTCCGATAACAAGCTTTCCGGCTGCTTACCAATGGAGATCGGCCTTTTAGAGAACACCGTTCTGTTGGACGCAAGCAAAAACTCCCTCACCGGCCCAATCCCACATTCCTTCGCTTGCTTAGCCAAAATGGAGCTTCTCAATTTCGCCGACAACCGCTTCTACGGCGCGGTTCCGGAGGCCGTCTGCAAATTACCAAACCTACAAAACTTCATCCTACGAAACAACTTCTTCACCCAAGTCGGCCCCGTCTGCCGGAGCTTGATCACGAAGAAAGTTCTAGACGTTTCTGGAAACTGCATTTTGGGTCTGTCGGAACAGAGATCTGAAGAGGAATGTACACATTTCTTCACCAATGTCGAGTATTGTCATGATGAGAAGTCAATGAAGTACATTCCTTGTAAAAGGAATTGGTATTTGAATGAAGATCCGGCCGCCGTGCTCCGTCGGCCGGCGAGGAAAGTGACGGAGATGAGAACTTACGCAGCTCTGTCCCCTCATTAA 1518 49.8 MAKPSPFALLFISNLFLFSFFFTAAIVVDEPSSKTDSQVKHTNTFFFYPWYTPPPPESPPPPPLLPPPPPPPPPPLPPLPPSPPPPSPPPPPPPLPSPPPPPPPYCATPSPPPPLPPSPPPPPPPPPPPPPPPSRTQIALKAINNFRQRIEFDPNNVTDTWKGPDPCKYKGFICDTVPDYKSEAVAGVSFNNFEFGGSKLILNGFIDQLPDITFFHANSNKFTGTVPELISDLRFFYELDLSNNIFTGEFPKQVLRATNLTFLDIRFNSFSGPVPEKLFDMDIISAIFLNNNKFNHYIPANLGNTPARYLTFTSNEFTGPIPKSIGIGKTKKNLIEVLFSDNKLSGCLPMEIGLLENTVLLDASKNSLTGPIPHSFACLAKMELLNFADNRFYGAVPEAVCKLPNLQNFILRNNFFTQVGPVCRSLITKKVLDVSGNCILGLSEQRSEEECTHFFTNVEYCHDEKSMKYIPCKRNWYLNEDPAAVLRRPARKVTEMRTYAALSPH 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6874031 6876389 - ClCG02G006170.1 Cla02g00622 266748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00622 505 MobiDBLite consensus disorder prediction 56 136 - -
Cla02g00622 505 PANTHER BNAC05G26270D PROTEIN 111 503 - -
Cla02g00622 505 Gene3D Ribonuclease Inhibitor 307 475 IPR032675 -
Cla02g00622 505 MobiDBLite consensus disorder prediction 56 137 - -
Cla02g00622 505 SUPERFAMILY L domain-like 142 441 - -
Cla02g00622 505 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 111 503 - -
Cla02g00622 505 PRINTS Proline rich extensin signature 81 93 - -
Cla02g00622 505 PRINTS Proline rich extensin signature 61 77 - -
Cla02g00622 505 PRINTS Proline rich extensin signature 93 114 - -
Cla02g00622 505 PRINTS Proline rich extensin signature 47 59 - -
Cla02g00622 505 Gene3D Ribonuclease Inhibitor 140 305 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00622 - - - cmax:111471075 638.262
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00622 Cla-Chr2:6874031 Cla05g01092 Cla-Chr5:11291471 3.28E-133 dispersed
Cla02g00622 Cla-Chr2:6874031 Cla02g00623 Cla-Chr2:6936998 0 tandem
Cla02g00622 Cla-Chr2:6874031 Cla05g01090 Cla-Chr5:11273547 2.40E-96 wgd
Cla02g00622 Cla-Chr2:6874031 Cla05g02068 Cla-Chr5:32366629 1.13E-79 wgd
Cla02g00622 Cla-Chr2:6874031 Cla08g01588 Cla-Chr8:28569871 1.55E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g379 . . . . . Bpe12g00048 . . Cmo19g00609 . . . . . . . Cpe15g00478 . . . . . . . Cla02g00622 Cam02g0651 Cec02g0652 Cco02g0680 Clacu02g0659 Cmu02g0654 Cre02g0973 Cone12ag1078 Cone8ag1116 Cone3ag0989 Cone10ag1007 . Csa07g00737 . Cme01g00071 Blo04g00475 . . . . . . Bma08g00811 . . . Cma11g01736 Cma19g00589 . . Cpe14g00287 Cpe01g00429 . . . . . . . . . . . . . . . . Chy01g00077 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000853 1 2 2 1 2 3 4 3 3 3 3 3 5 3 3 5 3 6 4 3 3 2 1 4 4 4 2 4 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00622 Cla_Chr02 FPKM 14.977987 14.731134 6.60093 6.215723 7.447134 5.894609 7.571404 3.022342 3.082472 3.67311