Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00623 ATGAAAATGGTCACATCCTCAGCTTTTGCATTTTTATCCATCTTTAATCTCCTCCTCTTCTCTTCCTTTTACGCTGTCGCTCTCGACATCAACATCGGTATTGGTATCGGCAACGGAAAAACTCCTCCGCCGTCCGAATCCTCTGATTGCAATACTTCTCCTCCACCGCCGCCTCCTCCTCCTCCTCCTCCTCCTCCGCCACCGCCGCCGCCACCTCCTCCTCCTCCTCCTCCGCCACCGCCGCCGCGGGTAAAAAAGCCATCACCAACTCCCTCCCCAAAACCTCCTCGAAAACAGCCGCCGGCGCCGGCGTTGCAATTCGAGAGCGAGAGAATCAAAATTGCATTTGGTGTGATTAAAAAGTACAAAAGTAGAATCGAGAATGACCCATTGAATGTTATAAAAACATGGAATGGGCCAAACGTGTGCAAATACAGAGGATTCAGTTGCGACACAGTTCCCGGCTTCGGAAAACAGAGAGGAGTTTCGGGGCTTAGCTTCAACAATTTCAATTTCAGTGGTTCGAAGTTGACCCTGAATGGGCTTGTAGACCAGTTGCAGGATCTCACATTCTTCCATGCCAATTCAAACTTCTTCTTCTCCACTATCCCAAAGCTCATCTCCAAGGTCAAATTCTTTTACGAGCTGGATCTTAGCAATAACAACTTCAGGGGATCGTTCCCTGATGAAGTCCTCGGCGCCGTTAATCTGACGTTCTTGGATCTCCGGTTCAATAACTATTACGGTCCGGTTCGGTCCGAGCTGTTTGATATGGACATCATCACAGCTATCTTCCTCAACAACAATAAGTTTAATCACAACATTCCGGCCAACCTCGGCAACACCCCTGCTCGGTACCTCACATTCACGAGCAACGAGTTCACCGGCGAGATCCCAAAAAGCATCGGAATCGGAAAAACAAAGAAGAGTCTAATCGAAGTCCTCTTTTCCGACAACAAGCTTTCCGGTTGTTTACCAATGGAGATGGGTCTTCTAGAGAACACCGTTCTGTTGGACGCAAGCAAAAACTCCCTCACCGGCCCAATCCCATTCTCCTTCAGCTGCTTAACCAAAATGCAGATTCTCAATTTCTCCGACAACACCTTATACGGCGCCGTTCCAGAGGACGTCTGCAAGTTACGAAATCTCCAACAATTCACACTCCGCAACAACTTCTTCACCCAAGTCGGCCCCGTCTGCCGGAGCTTGATCTCCAAGAAAGTTCTAGACGTTTCTGGAAACTGCATTTTGGGTCTGCCGAAACAGAGACCGGAGAAGGAATGTACGAATTTCTTCAGTAAAGGTCATTCTTGTCCTGATGAGAAGTCTATGAAGATTATTCCTTGTAAGCCGCCGAATTTCGGCCGCCATCCACCGCCGCCCAGGAAGCTGACGGAGATGAGAACTTATGCTGCTCTTGTTCCTAATTGA 1431 48.71 MKMVTSSAFAFLSIFNLLLFSSFYAVALDINIGIGIGNGKTPPPSESSDCNTSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPRVKKPSPTPSPKPPRKQPPAPALQFESERIKIAFGVIKKYKSRIENDPLNVIKTWNGPNVCKYRGFSCDTVPGFGKQRGVSGLSFNNFNFSGSKLTLNGLVDQLQDLTFFHANSNFFFSTIPKLISKVKFFYELDLSNNNFRGSFPDEVLGAVNLTFLDLRFNNYYGPVRSELFDMDIITAIFLNNNKFNHNIPANLGNTPARYLTFTSNEFTGEIPKSIGIGKTKKSLIEVLFSDNKLSGCLPMEMGLLENTVLLDASKNSLTGPIPFSFSCLTKMQILNFSDNTLYGAVPEDVCKLRNLQQFTLRNNFFTQVGPVCRSLISKKVLDVSGNCILGLPKQRPEKECTNFFSKGHSCPDEKSMKIIPCKPPNFGRHPPPPRKLTEMRTYAALVPN 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6936998 6941349 - ClCG02G006180.1 Cla02g00623 266749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00623 476 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 28 459 - -
Cla02g00623 476 MobiDBLite consensus disorder prediction 39 106 - -
Cla02g00623 476 PANTHER BNAC05G26270D PROTEIN 28 459 - -
Cla02g00623 476 MobiDBLite consensus disorder prediction 48 102 - -
Cla02g00623 476 Gene3D Ribonuclease Inhibitor 308 443 IPR032675 -
Cla02g00623 476 SUPERFAMILY L domain-like 128 418 - -
Cla02g00623 476 Gene3D Ribonuclease Inhibitor 117 307 IPR032675 -
Cla02g00623 476 PRINTS Proline rich extensin signature 47 59 - -
Cla02g00623 476 PRINTS Proline rich extensin signature 59 80 - -
Cla02g00623 476 PRINTS Proline rich extensin signature 80 96 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00623 - - - csv:101217723 648.277
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00623 Cla-Chr2:6936998 Cla05g01092 Cla-Chr5:11291471 3.96E-127 dispersed
Cla02g00622 Cla-Chr2:6874031 Cla02g00623 Cla-Chr2:6936998 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g378 Blo02g00837 . . . . Bpe12g00047 . . Cmo19g00607 Cmo11g01379 . . . . . Cpe04g00293 Cpe15g00477 Bhi05g01086 . . . . . . Cla02g00623 Cam02g0657 Cec02g0660 Cco02g0683 Clacu02g0665 Cmu02g0660 Cre02g0978 . Cone8ag1115 Cone3ag0990 Cone10ag1008 . Csa07g00736 . Cme01g00072 . . . . . . . Bma08g00812 . . . . Cma19g00588 . Car19g00446 . . . . . . . . . . . . . . . . . . Chy01g00078 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000853 1 2 2 1 2 3 4 3 3 3 3 3 5 3 3 5 3 6 4 3 3 2 1 4 4 4 2 4 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00623 Cla_Chr02 FPKM 2.200135 1.770975 3.241553 2.331317 6.429806 8.289246 8.293313 3.378576 3.512691 3.041727