Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00624 ATGGCGATTTCCCCCACTTTCTCCTTCCCCATCCTTGCTTTTCTTGCCCTCTTCCTCTGTTTTTCCCCATTTTCATCCGCTTCCCTTTCATCCACCTTCTCCATCATCGATGAAAATGCAAAACACCACCTGGGTATCCCCGAAATTGCCGATTCTGATGCCCAAGGATCCCCTCAACGGACCGACGCCGAGGTTGCGGCTCTGTACGAGTCCTGGTTGGTCCATCATGGAAAAGCCTACAACGCTCTCGGCGAGAAGGAGAGGCGGTTTGAGATTTTCAAGGATAATCTCAGGTTCATCGATGAACATAACCGGGAATCGCGGACGTATAAAGTTGGTTTGACCCGTTTCGCCGATCTCACCAATGAGGAGTATCGGGCAAAGTTTTTGGGTGGCCGAATCTCCCGGAAGCCTCGCCTATCTGCCGTCAAGAGCGGTAGATACGCGGCTACGCTCGGCGATGATCTTCCGGATCATGTCGATTGGAGAAAGAAGGGCGCTGTTGCGGCTGTTAAAGATCAAGGACAGTGTGGGAGCTGTTGGGCTTTCTCAACAGTTGCTGCAGTGGAAGGAATAAATCAAATCACCACCGGTGAATTGATCTCTCTGTCGGAGCAGGAACTTGTGGACTGTGACAAATCATATAACATGGGGTGCAATGGTGGTCTTATGGACTATGCTTTCCAGTTCATCATTGATAATGGTGGAATTGACACTGACGAAGATTACCCTTACAAGGGCCATGATGGTGCTTGTGATCCCAACCGGAAAAATGCCAAGGTTGTAACCATAGATGGATATGAAGATGTTCCTGAGAATGATGAGAGCTCCTTGAAAAAGGCTGTGGCAAGTCAACCAGTTAGTGTTGCCATTGAAGCTGGTGGCAGAGCCTTCCAACTTTACCAATCGGGTGTCTTCACTGGCCGTTGCGGAACCAATCTGGATCACGGTGTTGTCGCTGTTGGATATGGTACAGACAATGGTACAGATTATTGGATTGTGAGGAATTCATGGGGTAAAAACTGGGGAGAGAGTGGTTATATCAGGTTGGAGAGAAATGTGGCCAATATTACCACAGGCAAGTGTGGTATAGCAGTAGAGCCTTCATACCCCATCAAAACCGGAATGAACCCTCCAAAACCTGCTGCTTCTCCACCATCTCCTGTGAAGCCCCCGACCGAATGTGATGACTACTTCTCATGCGAGGAAGGAACTACCTGCTGCTGTATCTATCAATATGGAAGCACCTGCTTTGGTTGGGGATGCTGCCCGCTTGAATCCGCAACCTGCTGCGATGACCATTACAGTTGCTGCCCCCATGAATATCCAATCTGTGACCTCGAGGCAGGAACTTGCCTAATGAGCAAAGGCAGCACGATGGGAGTCAAACTGCTGAAGCGCCTTCCTGCGAAACGTACAAGAGGCATTGAGAAGCTTGGGAAGTTGTTTGTTGGTGCTTGA 1461 49.49 MAISPTFSFPILAFLALFLCFSPFSSASLSSTFSIIDENAKHHLGIPEIADSDAQGSPQRTDAEVAALYESWLVHHGKAYNALGEKERRFEIFKDNLRFIDEHNRESRTYKVGLTRFADLTNEEYRAKFLGGRISRKPRLSAVKSGRYAATLGDDLPDHVDWRKKGAVAAVKDQGQCGSCWAFSTVAAVEGINQITTGELISLSEQELVDCDKSYNMGCNGGLMDYAFQFIIDNGGIDTDEDYPYKGHDGACDPNRKNAKVVTIDGYEDVPENDESSLKKAVASQPVSVAIEAGGRAFQLYQSGVFTGRCGTNLDHGVVAVGYGTDNGTDYWIVRNSWGKNWGESGYIRLERNVANITTGKCGIAVEPSYPIKTGMNPPKPAASPPSPVKPPTECDDYFSCEEGTTCCCIYQYGSTCFGWGCCPLESATCCDDHYSCCPHEYPICDLEAGTCLMSKGSTMGVKLLKRLPAKRTRGIEKLGKLFVGA 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6955198 6957605 + ClCG02G006190.2 Cla02g00624 266750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00624 486 CDD Peptidase_C1A 157 371 IPR039417 -
Cla02g00624 486 Pfam Granulin 406 453 IPR000118 -
Cla02g00624 486 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 314 324 IPR025660 -
Cla02g00624 486 Gene3D Granulin 392 455 IPR037277 -
Cla02g00624 486 PANTHER CYSTEINE PROTEASE 49 401 - -
Cla02g00624 486 SMART Inhibitor_I29_2 69 125 IPR013201 -
Cla02g00624 486 Pfam Cathepsin propeptide inhibitor domain (I29) 69 125 IPR013201 -
Cla02g00624 486 Pfam Papain family cysteine protease 156 372 IPR000668 GO:0006508|GO:0008234
Cla02g00624 486 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 331 350 IPR025661 -
Cla02g00624 486 SUPERFAMILY Cysteine proteinases 61 372 IPR038765 -
Cla02g00624 486 PRINTS Papain cysteine protease (C1) family signature 174 189 IPR000668 GO:0006508|GO:0008234
Cla02g00624 486 PRINTS Papain cysteine protease (C1) family signature 316 326 IPR000668 GO:0006508|GO:0008234
Cla02g00624 486 PRINTS Papain cysteine protease (C1) family signature 331 337 IPR000668 GO:0006508|GO:0008234
Cla02g00624 486 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 49 401 - -
Cla02g00624 486 SMART pept_c1 156 372 IPR000668 GO:0006508|GO:0008234
Cla02g00624 486 Gene3D Cysteine proteinases 52 374 - -
Cla02g00624 486 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 174 185 IPR000169 -
Cla02g00624 486 SUPERFAMILY Granulin repeat 392 426 - -
Cla02g00624 486 SMART GRAN_2 395 452 IPR000118 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00624 K25900 RD21; cysteine proteinase RD21 [EC:3.4.22.-] - csv:101222543 860.522
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla02g00624 Cla02g01045 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00624 Cla-Chr2:6955198 Cla08g00332 Cla-Chr8:7928582 6.40E-86 dispersed
Cla03g01446 Cla-Chr3:30036709 Cla02g00624 Cla-Chr2:6955198 6.23E-60 dispersed
Cla11g01133 Cla-Chr11:23156993 Cla02g00624 Cla-Chr2:6955198 1.47E-36 dispersed
Cla02g00332 Cla-Chr2:3252199 Cla02g00624 Cla-Chr2:6955198 4.64E-129 transposed
Cla02g00887 Cla-Chr2:12595688 Cla02g00624 Cla-Chr2:6955198 1.52E-108 transposed
Cla08g01454 Cla-Chr8:27436366 Cla02g00624 Cla-Chr2:6955198 1.93E-117 transposed
Cla11g01846 Cla-Chr11:32039763 Cla02g00624 Cla-Chr2:6955198 1.29E-124 transposed
Cla01g01665 Cla-Chr1:31545388 Cla02g00624 Cla-Chr2:6955198 1.69E-164 wgd
Cla02g00624 Cla-Chr2:6955198 Cla05g02070 Cla-Chr5:32386351 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g328 . . . . . Bpe12g00163 . . . Cmo11g01384 Cma02g00311 Cma20g00695 Car02g00192 . . Cpe04g00295 . Bhi05g01087 . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . . . . Csa07g00228 . Cme01g00073 Blo04g00616 Blo13g00456 . . Bpe15g00768 . Bma03g00653 Bma08g00825 . Cmo02g00305 Cmo20g00687 . . . . . Cpe05g01328 . . . . . . . Cla02g01045 Cam02g1113 Cec02g1118 Cco02g1152 Clacu02g1099 Cmu02g1059 Cre02g1367 Lsi11g01321 . Chy01g00080 Cme11g01011
Vvi3g605 . . . . . Bpe12g00293 . . Cmo19g00605 . . . . . . Cpe04g00295 Cpe15g00476 . . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . Cone3ag0991 Cone10ag1012 Lsi03g00521 Csa07g00735 . Cme01g00073 . . Bda15g00848 Bda14g01450 . . Bma03g01355 Bma08g00518 . . . Cma11g01732 . Car11g01109 Car19g00445 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001585 7 2 1 3 5 2 3 1 2 1 1 1 2 2 2 1 0 5 4 2 2 2 2 2 2 1 2 5 3 3 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00624 Cla_Chr02 FPKM 1.321799 1.338954 5.405746 5.458219 0.0 0.0 0.0 38.656227 38.874058 37.565556