Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00625 ATGGATCCAAATTCTACTGATTCCTCAACATCACCTACTGTTAATTCCTCGGAAACTAAACCACCAGAAGTACAGCCTCAGGCTCCTGCTACCACTGGAATGGATAATGTAACCCGTGATGCACCGTCTAAGCTATCTCCTAGTGGCATAACTTCATGGGCCAAAAACTTGAAAATTTCTCAACCACAGTCAGCTTCACAAGATGGAACGACTGATAATGCTGCTGGGAAGTCAGCTTTTGCACGTTTTACTAGTGGCTTAGGTTTGAACTTATCTCCAAAATCTGCTGCTTCTAATGATTCCCCAGATGGAACTTCTAAACCTGCCCAACCCAGTTTTGTGGGATCAATTACAAGAGGATTGGTTGACTCTTCAAAGAGTGCTGTAAAGGCTGTACAAGTTAAAGCTCGTCATGTTGTCTCCCAAAATAAGCGAAGATACCAGGAAGGTGGATTTGATTTGGATATGACTTATATTACTGAAAATATCATTGCCATGGGTTTTCCTGCTGGTGACATGAGCTCAGGGTTTTTTGGATATGTTGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATCAAGTTCTTTGAATCACATCACAAGGGAAAATACAAAGTATATAATCTTTGTTCCGAGAGGCTATATGATGCTTCATTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCATAACTGTCCCCCACTTCAACTCATAATATCATTTTGCCAAAGTGCTTATTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACAGGCTTGATGATTTCCAGCCTTCTTCTGTTTCTGAAGTTCTTTCCAACCGCTGAAGAATCCATTGAATACTACAACCAGAGAAGGTGTTTTGATGGCAAAGGTCTGGTTTTACCAAGTCAGATTAGGTATGTCAAATATTTTGAGCGTATTCTAACATACTTCAATGGAGAAAATCCTCCCAGTCGCAGATGTGTGCTTAGAGGGTTTCGTCTCCACAGATGCCCATATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTGTTCTGTTCTCCACTAAAGTACATCCAAGAACCAAGAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGATAATGGTCTTTGCCTTGCCTGGGGAGCCTGGTCTAGCTGAGTTATGTGGGGACTTCAAGGTTCATTTTCACGACCGCCAAGGAGATTTCTATTGTTGGCTAAACACAACCATGACCGAAAATCGGAAAATGCTGTACACGAATGATCTTGATGGGTTTGACAAGGTGAGTACCGAAGTTTCCTTGTTTAATACAATGACAAGGACAAGGAGACATTACCTGTTGTTTTTAAAACATTCTAAACGATATCTATTTTGTTTTCTGCAGAGGAAACTACCTTCCCCCGGATTTCAGGTGGAGGTTGTTCTAGTTGATACGTCGCCCAACATGGACAATACTACCAAGAAGTCGGATGAAAGCTCAGGCTCAAGACCTTCTGCAGCTGATGGAAGTGAAGTTTCTGAGAACCAAAACAGAAAATCAGGAACTAATGATAGAGATGATGTATTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGAGCAAGAAGGAGGCAACTTCAGGTTCAGGGAATGATGGATCAGCTGTCAAGCCGGCATCTAAATCTCAAACAAGTACGACTTCATCAGATGATGTTGCGAGTTTAACACATGCAACAAAGCAAGTTTCCCTGGGAGATGGTGGAGCTAAACAGACTGCTCCTCCCAGTGATCGAAAAGGCGATGGAGCTGGAAGATCTGATTCTCTCCCAGAAGTTCCAAACTCAGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTTGGCGACGACGAAGACTATGAGAGTGAGTAA 1944 42.34 MDPNSTDSSTSPTVNSSETKPPEVQPQAPATTGMDNVTRDAPSKLSPSGITSWAKNLKISQPQSASQDGTTDNAAGKSAFARFTSGLGLNLSPKSAASNDSPDGTSKPAQPSFVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFESHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPLQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIEYYNQRRCFDGKGLVLPSQIRYVKYFERILTYFNGENPPSRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKVHPRTKSLSPEDFWFTAPKKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKVSTEVSLFNTMTRTRRHYLLFLKHSKRYLFCFLQRKLPSPGFQVEVVLVDTSPNMDNTTKKSDESSGSRPSAADGSEVSENQNRKSGTNDRDDVFSDSESEGGSSKSKKEATSGSGNDGSAVKPASKSQTSTTSSDDVASLTHATKQVSLGDGGAKQTAPPSDRKGDGAGRSDSLPEVPNSESEFKAMAADASVFTFGDDEDYESE 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6960842 6967184 + ClCG02G006200.2 Cla02g00625 266751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00625 647 MobiDBLite consensus disorder prediction 494 628 - -
Cla02g00625 647 MobiDBLite consensus disorder prediction 1 74 - -
Cla02g00625 647 ProSiteProfiles C2 tensin-type domain profile. 331 492 IPR014020 -
Cla02g00625 647 SMART PTEN_C2_2 329 452 IPR014020 -
Cla02g00625 647 ProSiteProfiles Phosphatase tensin-type domain profile. 145 324 IPR029023 -
Cla02g00625 647 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 472 647 - -
Cla02g00625 647 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 14 443 - -
Cla02g00625 647 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 259 298 IPR000387 GO:0016311|GO:0016791
Cla02g00625 647 MobiDBLite consensus disorder prediction 548 588 - -
Cla02g00625 647 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 472 647 - -
Cla02g00625 647 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 14 443 - -
Cla02g00625 647 MobiDBLite consensus disorder prediction 494 524 - -
Cla02g00625 647 MobiDBLite consensus disorder prediction 525 547 - -
Cla02g00625 647 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 158 326 IPR029021 -
Cla02g00625 647 MobiDBLite consensus disorder prediction 92 112 - -
Cla02g00625 647 ProSitePatterns Tyrosine specific protein phosphatases active site. 261 271 IPR016130 GO:0016311|GO:0016791
Cla02g00625 647 Gene3D Protein tyrosine phosphatase superfamily 130 327 IPR029021 -
Cla02g00625 647 CDD PTP_PTEN 155 320 IPR045101 GO:0016791
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00625 K01110 PTEN; phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [EC:3.1.3.16 3.1.3.48 3.1.3.67] - csv:101222304 1114.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00625 Cla-Chr2:6960842 Cla06g01570 Cla-Chr6:29256796 5.37E-07 dispersed
Cla10g01471 Cla-Chr10:29933089 Cla02g00625 Cla-Chr2:6960842 1.86E-47 transposed
Cla01g01668 Cla-Chr1:31569197 Cla02g00625 Cla-Chr2:6960842 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g606 . . . . . Bpe12g00294 . . . Cmo11g01384 . . . . . Cpe04g00296 Cpe15g00475 . . . . . . . Cla02g00625 . Cec02g0662 . . Cmu02g0661 . . . Cone3ag0992 Cone10ag1013 Lsi03g00522 Csa07g00734 . Cme01g00074 . . Bda15g00847 Bda14g01451 . . Bma03g01356 Bma08g00514 . . . Cma11g01730 Cma19g00587 Car11g01110 . . . . . . . . . . . . . . . . . . . Chy01g00080 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g01668 . 76 649 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.5e-191 665.2
Cla02g00625 . 42 647 Protein tyrosine phosphatase (PTP) family AT3G50110 54.8 1.8e-174 609.8
Cla10g01471 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.7e-157 552.7
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT3G10550 63.6 8.0e-308 1053.1
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT5G04540 59.4 3.8e-286 981.1
Cla06g01227 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cla09g00969 . 86 390 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 3.2e-122 435.3
Cla06g01782 . 188 1083 Protein tyrosine phosphatase (PTP) family AT5G23720 65.1 0.0e+00 1087.8
Cla09g02029 . 69 234 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 8.7e-71 263.5
Cla05g02189 . 107 419 Protein tyrosine phosphatase (PTP) family AT3G52180 53.7 2.1e-90 329.3
Cla07g00459 . 10 274 Protein tyrosine phosphatase (PTP) family AT3G10940 67.7 2.5e-104 375.6
Cla10g01351 . 143 558 Protein tyrosine phosphatase (PTP) family AT3G01510 68.6 5.8e-180 627.5
Cla02g01771 . 93 296 Protein tyrosine phosphatase (PTP) family AT2G32960 59.4 3.8e-75 278.5
Cla09g01043 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.1e-73 272.7
Cla10g00234 . 87 419 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 3.1e-101 365.5
Cla11g00178 . 17 266 Protein tyrosine phosphatase (PTP) family AT2G35680 54.7 4.3e-79 292.0
Cla10g00234 . 123 298 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 6.2e-43 171.0
Cla02g01771 . 127 296 Protein tyrosine phosphatase (PTP) family AT4G03960 78.2 6.3e-78 287.3
Cla09g01043 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.3e-70 260.8
Cla03g01026 . 13 186 Protein tyrosine phosphatase (PTP) family AT4G03960 56.9 2.0e-55 212.6
Cla03g01026 . 7 212 Protein tyrosine phosphatase (PTP) family AT3G02800 65.5 6.0e-76 280.8
Cla02g01771 . 118 290 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.8e-57 218.0
Cla07g00286 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.7e-63 239.2
Cla10g01471 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.7e-157 552.7
Cla02g00625 . 8 647 Protein tyrosine phosphatase (PTP) family AT3G19420 61.1 1.5e-215 746.1
Cla01g01668 . 74 649 Protein tyrosine phosphatase (PTP) family AT3G19420 60.8 6.9e-200 694.1
Cla01g01668 . 76 649 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.5e-191 665.2
Cla02g00625 . 42 647 Protein tyrosine phosphatase (PTP) family AT3G50110 54.8 1.8e-174 609.8
Cla06g01227 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT3G10550 63.6 8.0e-308 1053.1
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT5G04540 59.4 3.8e-286 981.1
Cla02g02139 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 3.2e-69 258.8
Cla10g00175 . 50 300 Protein tyrosine phosphatase (PTP) family AT2G35320 62.9 2.9e-90 328.9
Cla04g00726 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 1.4e-286 982.2
Cla04g00726 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 2.0e-258 888.6
Cla04g00726 . 86 682 Protein tyrosine phosphatase (PTP) family AT5G28210 55.6 4.1e-184 641.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00625 Cla_Chr02 FPKM 4.570226 4.999142 2.496024 2.374631 5.096264 4.665932 5.96713 1.94544 1.36294 2.11729