Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00627 ATGGCTTTGCACTCAAATAAACTCAGAACCCAACGCCTCCATAACTCTCTCTTCTTCTTCGACTTCTTCCACTGCACTGAACAACAACACCTTCAAACAGAGCATCCCATTTTCCTCAACAATGGCGGCACCAACAACTTCCCCTTTTTCCAAGAAACAACCCATTTCCATATTTACGAAGACGAGGAGCTCAATCATTTGTTGTCCAAAGAAAAAGACCAGAATCTCCAAGCCGGCGCCGTTTTGAAAACCTTGGTTCAAACAGATAATGCTTTGTCTCTCGCTAGAACAGAGGCCATCGACTGGTTGCTTAAAGTTAATGCCTTTTATGGCTTCTCCTCTCTCACAGCTCTCTTAGCAATTAATTACCTCGATAGAATCCTCTCTGGCCCCCATTTTCAAAGAGATAAGCCATGGATGCTTCAGCTTCTTGCTGTAACTTGCATCTCTTTAGCTGCTAAAGTCGAAGAAATTCGTGTCCCGCTTCTTCTAGATCTCCAGGTGGAAGATTCAAAGTACATTTTTGAAGCGAAAACGATACAGAGAATGGAGCTTTTGGTGCTTACTGCTCTGCAATGGAAGATGCATCCAGTGACCCCTGTTTCGTTTCTTGGCATTATCACAAAAGGGCTTGGAATGAAGAATCAGTACATTCAAAGAGAGTTTCTTAGACGTTGTGAGCGTCTTCTCCTCTCTCTTGTCTCTGATTCGAGGTCGGTGGGGATTCTTCCTTCTGTAATGGCGGTATCAGCAATGGTGAGCGTTGTTGAAGAGATGGGAAGCTGTAACCCATTGGAGGAGTTTCAGGATCAGCTTCTTAATGCCCTCAAAATAAATAAGGGGAGAGTGAAGGAGTGTTGTAAAGTGATAATGGAGGCAAAAGCCAAAGGATCAGGGAAAAGGAAGCATGTGGAGGAGGAAGCAGAATCAGAAGCAGAAGCAGAATCATCAGAAGCAGAAACAGAGGAAGAAGCAGAAGCAGGGAGTCCAAATGGAGTAATGGAGGCTAATTTCAGCTGTGAAAGCTCCAATGATTCGTGGGAAATGGGGTCGATTGTGTCAGAGTACACACATTTCTCTTCTTCTTCTTCTTCCAAAAGAATCAGACCCACTCGATGA 1119 44.15 MALHSNKLRTQRLHNSLFFFDFFHCTEQQHLQTEHPIFLNNGGTNNFPFFQETTHFHIYEDEELNHLLSKEKDQNLQAGAVLKTLVQTDNALSLARTEAIDWLLKVNAFYGFSSLTALLAINYLDRILSGPHFQRDKPWMLQLLAVTCISLAAKVEEIRVPLLLDLQVEDSKYIFEAKTIQRMELLVLTALQWKMHPVTPVSFLGIITKGLGMKNQYIQREFLRRCERLLLSLVSDSRSVGILPSVMAVSAMVSVVEEMGSCNPLEEFQDQLLNALKINKGRVKECCKVIMEAKAKGSGKRKHVEEEAESEAEAESSEAETEEEAEAGSPNGVMEANFSCESSNDSWEMGSIVSEYTHFSSSSSSKRIRPTR 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6991298 6994274 + ClCG02G006220.2 Cla02g00627 266753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00627 372 CDD CYCLIN 96 188 IPR013763 -
Cla02g00627 372 PANTHER CYCLINS 35 355 IPR039361 -
Cla02g00627 372 Pfam Cyclin, C-terminal domain 198 312 IPR004367 -
Cla02g00627 372 SMART cyclin_7 101 189 IPR013763 -
Cla02g00627 372 ProSitePatterns Cyclins signature. 96 127 IPR006671 -
Cla02g00627 372 PANTHER CYCLIN-D3-1 35 355 - -
Cla02g00627 372 SMART Cyclin_C_2 198 318 IPR004367 -
Cla02g00627 372 Pfam Cyclin, N-terminal domain 82 195 IPR006671 -
Cla02g00627 372 Gene3D - 77 196 - -
Cla02g00627 372 SUPERFAMILY Cyclin-like 53 196 IPR036915 -
Cla02g00627 372 Gene3D - 65 288 - -
Cla02g00627 372 Coils Coil 300 325 - -
Cla02g00627 372 MobiDBLite consensus disorder prediction 298 345 - -
Cla02g00627 372 MobiDBLite consensus disorder prediction 310 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00627 Cla-Chr2:6991298 Cla08g01149 Cla-Chr8:24274694 6.88E-41 dispersed
Cla01g01670 Cla-Chr1:31597532 Cla02g00627 Cla-Chr2:6991298 4.96E-77 wgd
Cla02g00627 Cla-Chr2:6991298 Cla05g01093 Cla-Chr5:11320100 2.33E-91 wgd
Cla02g00627 Cla-Chr2:6991298 Cla05g02076 Cla-Chr5:32411834 1.17E-54 wgd
Cla02g00627 Cla-Chr2:6991298 Cla08g01590 Cla-Chr8:28591192 1.24E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00627 K14505 - csv:101222066 555.444