Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00633 ATGGCGGCGACAACCGATCCAAATCCGATCCAGACAAATCCAACACTCAATCCACCTCCAAACAAGCGGATCTTCATCCTCTCCGGCCAGAGCAACATGGCGGGACGCGGCGGCGTCTTAAAGAAGCCCCACCGGTGGGACGGCGTGGTCCCACCAGAAGCACAACCGCACCCGTCGATATTCCGGCTGAGCGCGAAGAAGCAATGGGAGGTGGCGCGTGAGCCACTCCACGCGGACATCGACACAGAGAAGACGTGCGGGGTGGGCCCGGGTATGGTGTTTGCGAACGGAGTGAGAGAGCGGGTGGGGACGGTGGCGGTGGTGCCGTGCGCCGTCGGAGGAACGGCGATCAGAGAGTGGGCGCGTGGGGAGAAGCTGTATGAGGAAATGGTGAAGAGGGCGAGATATAGCGTGAAGGACGGCGGAGAAATTAGGGCCATTCTGTGGTTTCAAGGAGAAAGTGACACCTCTACTGAAAATGATGCTGATGCGTATCAGGGGAAGATGGAGGCGTTTGTTGCTAATGTGCGCCGGGATTTGGCTTTGCCTTCTCTCCCAATCATTCAGGTAGCACTGGCATCAGGATCCAAGTACATTGAAAAAGTAAGGGAGGCTCAATTGGGGATGAAAATGGAGAATTTGGTGTGTGTGGATGCAAAGGGATTGGAACTCCAAGAAGACAACCTCCATCTCACAACACATGCTCAGGTCATTTTGGGTCAAATGCTGGCCGCTGCCTATCTCACCCACTTTGCTGTACCCCTCTCGCATCATTCTCCTTGA 783 55.56 MAATTDPNPIQTNPTLNPPPNKRIFILSGQSNMAGRGGVLKKPHRWDGVVPPEAQPHPSIFRLSAKKQWEVAREPLHADIDTEKTCGVGPGMVFANGVRERVGTVAVVPCAVGGTAIREWARGEKLYEEMVKRARYSVKDGGEIRAILWFQGESDTSTENDADAYQGKMEAFVANVRRDLALPSLPIIQVALASGSKYIEKVREAQLGMKMENLVCVDAKGLELQEDNLHLTTHAQVILGQMLAAAYLTHFAVPLSHHSP 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7104209 7107221 - ClCG02G006300.1 Cla02g00633 266759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00633 260 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 22 248 IPR005181 -
Cla02g00633 260 SUPERFAMILY SGNH hydrolase 24 251 - -
Cla02g00633 260 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 19 251 - -
Cla02g00633 260 PANTHER BNACNNG62850D PROTEIN 19 251 - -
Cla02g00633 260 MobiDBLite consensus disorder prediction 1 21 - -
Cla02g00633 260 Gene3D SGNH hydrolase 21 252 IPR036514 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00633 - - - bhj:120078124 473.781
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00633 Cla-Chr2:7104209 Cla08g00703 Cla-Chr8:19283156 3.40E-62 dispersed
Cla02g00633 Cla-Chr2:7104209 Cla05g02078 Cla-Chr5:32434860 9.68E-83 wgd
Cla02g00633 Cla-Chr2:7104209 Cla08g01592 Cla-Chr8:28601637 7.92E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g619 Blo02g00841 . . Bda08g00768 . . Bma05g00526 . Cmo19g00597 . . . . . . . Cpe15g00469 . . . . . . . Cla02g00633 Cam02g0666 . . Clacu02g0674 Cmu02g0668 . Cone12ag1073 . . . Lsi03g00529 . . . . . . . . . . . . . . . Cma19g00581 . Car19g00443 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009277 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00633 Cla_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0