Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00636 ATGTGTATGATTCAATGGGCCAAGATAAATGATATCATTCGGCCCAGTAGACGTCAAGATGGGCCGTGTAGCCAATATACGTCGGCTTATTTCCTTGTTTTCGGTGTAAATACGAAATCCCTCCTTTTCGTTGTTCGTTTCCTAAACCGGCCCCCCGCCATGGTACTTCGGGCGCTCCTCCGTCGTTCCGTCATCCTCCGGACTTCCCCATCTTCGGCCGCTCCCGGCGGCGGAAGCTTCCATTTCTCAATTTTTCATGAGTTGAAGTCCACCTTAGCCTTGAGTAACACCACAGAAAACGTATCGGAACAGAAGAATGAAAAGGGAAGCAATAGATGGTTCACGTTGCCTCCATACACTACAACTGTAAACGGCTCGGTTTTAGGTAATCGTATATTGAACAGAGGAGCTCAAGCCGAAGCAGAAGCTTCCACTGTTTCAAACACTGCTCTGAAATGGGTGATTCGTTGCTGCCCGGAGCTGCCAAGGAGTCTCGTGCAAAAGCTATTTCGACTGAGAAAGGTTCGAAGAGGTTCTTCTACAATTGAAAATTCTGAATGTAATTTGGAAGCTGGAGACCAACTTAAAAGAGTAGCAGCCAAGGACATTCTGAACGTAGGTGATCAAATTTTTCTCCCTATCTCCGTTCAAGTGTTCCCCAGAGAGAAAGCTCGGGGTTATTGCAATAAAGAAGAAGAGAAATTCATACACAGTTTAGTATTGTATAAGGATCCAGCAATACTTGTTATCAATAAACCTCCTGGCTTGCCCGTACAGGGTGGGATTGGTGTCAAAAGAAGTTTAGATGAATTGGCTGCAAGTTGTTTAAGATATGACTACTTGGAACCACCTCGACTAGTACACAGGCTTGACAGGGACAGCAGTGGCATCTTGATAATGGGCAGGACTTCTACAAGTACTTCAGTTCTTCATTCTGTCTTCCGTGAGAAAACTTTTGAGGCATCGACACATGCAAACCGTGTTGATAGTGAGAAAAAGTTTTTGGAAAAGAGGTATTGGGCACTTGTAATTGGTTCTCCTAGACGTTCAAAGGGGTTGATTACAGCCCCACTAGGAAAGATCGTGTTGGATGATGGAAGATCTGAGCAAATTATGGTCATTGACAATGCCGAATCTATGCCTTTTCAGCAAGCAATTACTAGATATAAAGTGATCAAATCTCATCATGGATACACTTGGTTGGAGCTGTGTCCCCTCACTGGAAGAAAACATCAGCTTCGTGTACACTGTGCGGAGGTATTAGGAACGCCTATAGTTGGAGACTACAAATATGGATGGCAAGCACATAGAAACTTGAAAGCATTTCATTCTAATTTCCACAAGAATCAAGGAAAGAAACAATCTCTCCCGTTTGGTCTTGACTTTGAAAGTGGAAGTATTGCAGAAAATAACCCTCGCCTACACCTTCATTGTAAGCAACTGAGTTTACCAGATGTTTCTTTTGCACTGCATAATGATTCTCTAGGTCATGACTGCTCAAGATTGGAATGTCTGGAGTTGGATGCTCCTTTGCCTTCATACATGCAAAGAAGTTGGGATATCATAAATAATTAA 1575 43.3 MCMIQWAKINDIIRPSRRQDGPCSQYTSAYFLVFGVNTKSLLFVVRFLNRPPAMVLRALLRRSVILRTSPSSAAPGGGSFHFSIFHELKSTLALSNTTENVSEQKNEKGSNRWFTLPPYTTTVNGSVLGNRILNRGAQAEAEASTVSNTALKWVIRCCPELPRSLVQKLFRLRKVRRGSSTIENSECNLEAGDQLKRVAAKDILNVGDQIFLPISVQVFPREKARGYCNKEEEKFIHSLVLYKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLRYDYLEPPRLVHRLDRDSSGILIMGRTSTSTSVLHSVFREKTFEASTHANRVDSEKKFLEKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAESMPFQQAITRYKVIKSHHGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRNLKAFHSNFHKNQGKKQSLPFGLDFESGSIAENNPRLHLHCKQLSLPDVSFALHNDSLGHDCSRLECLELDAPLPSYMQRSWDIINN 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7172992 7177039 - ClCG02G006340.2 Cla02g00636 266762

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00636 524 PANTHER RNA PSEUDOURIDINE SYNTHASE 3, MITOCHONDRIAL 92 522 - -
Cla02g00636 524 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 92 522 - -
Cla02g00636 524 SUPERFAMILY Pseudouridine synthase 235 521 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cla02g00636 524 Pfam RNA pseudouridylate synthase 247 418 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cla02g00636 524 CDD PseudoU_synth_RluA_like 247 483 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cla02g00636 524 Gene3D Pseudouridine synthase 228 490 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00636 - - - csv:101214863 822.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00636 Cla-Chr2:7172992 Cla08g01074 Cla-Chr8:23428653 3.31E-87 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g630 . . . . . . . . Cmo19g00594 . . . . . . . Cpe15g00466 . . . . . . . Cla02g00636 Cam02g0669 Cec02g0677 Cco02g0699 Clacu02g0677 Cmu02g0671 Cre02g0992 . . . . Lsi03g00533 . . . . . . . . . Bma03g01362 . . . . . Cma19g00579 . Car19g00439 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012254 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00636 Cla_Chr02 FPKM 19.800364 20.496836 21.512238 23.365751 15.61645 13.375711 13.377039 14.470465 18.463615 15.746994