Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00648 ATGGCAAAACCAGTCAACAGTTTATCATTATATAAACCAGCCAAGCTGCCAAAGCTCAACTTCATAACAACCATGGCTTCCAACAAGATCATCTTCTTCCTTGTTTCCTCTCTCCTTCTCCTACTGACGGTTTCCGCCATTGAGTACACGGTCACCAACAAAGCCATCGGAACTCCTGGTGGCGTGCGCTTCAACAATGAAATCGGCGTGGCCTACAGCCGGCAGGTATTGGTAGCTGCCACTGATTTTATATGGAAGATTTTCCGGCAACGCTCCAATGGTGACCGGAAGAATGTGCAGAAGGTTAGCCTATTCATCGTCACAGACTACGACGGAGTGGCATTTGCTAGCAACAATGAAATTCACGTTAGCGCCAACTATATTGCAAACTATGGCGGGGATTTGAAGAGGGAGATAACAGGTATATTATACCATGAAATGACTCATATCTGGCAGTGGAACGGGAACCCGAGCGCACCGGGTGGGTTGGTCGAAGGGATCGCCGATTTCGTACGGCTGAAGTCGGGGTATATTCCAGGGCACTGGGTGGGGCCGGGCGGCGGGAGTAGGTGGGATGAAGGCTACGATGTGACGGCAAGATTTTTGGATTATTTAGAGGGGCTGAGAAATGGGTTTGTGGCGGAGCTGAACCGGAGGCTAAAAAATGGCTACTCCGCCGATTACTTCGTGCAGTTGCTGGGGAAGCCGGTGGATCAGCTCTGGGCAGATTACAAGGCAGCCTTCGGAAATTAG 753 50.46 MAKPVNSLSLYKPAKLPKLNFITTMASNKIIFFLVSSLLLLLTVSAIEYTVTNKAIGTPGGVRFNNEIGVAYSRQVLVAATDFIWKIFRQRSNGDRKNVQKVSLFIVTDYDGVAFASNNEIHVSANYIANYGGDLKREITGILYHEMTHIWQWNGNPSAPGGLVEGIADFVRLKSGYIPGHWVGPGGGSRWDEGYDVTARFLDYLEGLRNGFVAELNRRLKNGYSADYFVQLLGKPVDQLWADYKAAFGN 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7428664 7430119 + ClCG02G006460.1 Cla02g00648 266774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00648 250 Pfam Peptidase of plants and bacteria 47 244 IPR007541 -
Cla02g00648 250 PANTHER - 26 248 IPR007541 -
Cla02g00648 250 PANTHER PLANT BASIC SECRETORY PROTEIN (BSP) FAMILY PROTEIN 26 248 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00648 - - - csv:101221124 392.119
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00646 Cla-Chr2:7386446 Cla02g00648 Cla-Chr2:7428664 3.81E-112 dispersed
Cla02g00648 Cla-Chr2:7428664 Cla09g02184 Cla-Chr9:39480656 2.07E-09 dispersed
Cla02g00647 Cla-Chr2:7404275 Cla02g00648 Cla-Chr2:7428664 9.08E-80 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g644 . . . . . . . . Cmo19g00588 . . . . . . . Cpe15g00459 . . . . . . . Cla02g00648 Cam02g0681 Cec02g0694 Cco02g0714 Clacu02g0689 Cmu02g0684 Cre02g1003 . . . . Lsi03g00545 . . . . . . Bda14g01462 . . Bma03g01372 . . . . . Cma19g00573 . Car19g00433 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001757 1 4 2 2 2 3 2 3 3 4 2 3 2 2 3 1 3 2 2 3 3 1 2 1 2 3 2 1 3 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00648 Cla_Chr02 FPKM 1.631476 1.86738 4.413116 5.993266 13.910605 13.285469 15.501005 3.860848 3.947132 4.160353