Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00660 ATGGCAACCTTCACCTCTTCTCTCTCGCTCCCTCTCCAATTCCATCGCTTATCTCGCTCTCGCCGCCAATTTTCTTCACCTCCTCTTCCTCCTTCCGCCAATTTCACCTTCCGATTCTCAGCCCTAACTATCTCCTCCTCCTCCTTGCACTCCGCCTCCGACAATTTTGATCATGCCAACCACTCGCACTCGCGTTTTTCATCCAAGAAACTAGTTCTTTCATCTTTGATACAAGAGATAGAGCCGTTAGATGTAAGCGTAATCCAGAAAGATGTTCCACCTACCACTGTGGATGCTATGAAAAGGACTATCTCAGGCATGCTGGGGTTACTTCCATCTGACCAGTTTCAAGTTTTAGTTGAGGCTTTATGGGAACCAGTATCTAAGTTATTAGTTTCTTCAATAATGACCGGGTACACATTGCGTAATGCTGAATATAGACTCTGCCTTGAAAGAAATCTCGACTTTGATGATGGAAATAAGGACAAACAATCAAATGATAATTGTAGAGTTAACCTACATGAAATGTTGCTTGACAGTGCAAATTTAGCAAATGTTTCAGATGAAAACGAGTCTTCTTCCAATTTTGAGGAATCGTTGGACAAATCATCAGAAAGCATTAATATTCAAGGCATTGGCGAAACTTCTCCTGAAGTTCAACAACATATTCTTCATTTGCAGTTCCAATTATCTTCAATTAAAAAGGAACTCCATGAGGTAAAGAGGAAAAGTGAAGCTCTTCAGATGCAACAGTTTGTTGGTGAGGAGAAAAATGATCTTTTGGACTATCTGAGATCATTACAGCCAGAAAAGGTGGCTGAGTTGTCCGAACCTACATCCCCTGATTTAAAAGAAGCCATACATTCTGTTGTCCATGGACTTCTTGCGACCCTTTCCCCAAAGGTTCATTCCAAAGTTCCTTCTCAATCAGAAAATATTGGAACAAGCACAACAAATATTGGTAATGAAGACTGTGCAGAACTTGTTGAGAATACTTCTCTCCAATTCGAGCCTCTCTTAACATTAACTCGAGACTATCTGGCTCGTCTACTTTTCTGGTGCATGCTGTTGGGGCATTACCTGAGAGGCTTGGAATACAGAATGGAGCTGATGAATCTTCTTTCCCTTTCAAGCAATGTTGAAAATGCAGCAGGTATCCTCTGGAAGTATATATACAGCTTTCAAATAAAGTGTCTTTTTTTGGGTCCCAATGGCATCATCTACAACTTCTATGGCTTCCTGGCCTCCTCCATGTACAACGTAATTTTACTGAATTTGCTTTTCCAAATTGAATTTCGGTGGGTCACACACAAGTTTTGTAAGGATGCTCACAGCAGTTGGGGTCAGTAA 1350 41.19 MATFTSSLSLPLQFHRLSRSRRQFSSPPLPPSANFTFRFSALTISSSSLHSASDNFDHANHSHSRFSSKKLVLSSLIQEIEPLDVSVIQKDVPPTTVDAMKRTISGMLGLLPSDQFQVLVEALWEPVSKLLVSSIMTGYTLRNAEYRLCLERNLDFDDGNKDKQSNDNCRVNLHEMLLDSANLANVSDENESSSNFEESLDKSSESINIQGIGETSPEVQQHILHLQFQLSSIKKELHEVKRKSEALQMQQFVGEEKNDLLDYLRSLQPEKVAELSEPTSPDLKEAIHSVVHGLLATLSPKVHSKVPSQSENIGTSTTNIGNEDCAELVENTSLQFEPLLTLTRDYLARLLFWCMLLGHYLRGLEYRMELMNLLSLSSNVENAAGILWKYIYSFQIKCLFLGPNGIIYNFYGFLASSMYNVILLNLLFQIEFRWVTHKFCKDAHSSWGQ 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7575481 7582854 + ClCG02G006580.2 Cla02g00660 266786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00660 449 PANTHER OS02G0833400 PROTEIN 34 383 - -
Cla02g00660 449 Coils Coil 230 250 - -
Cla02g00660 449 PANTHER MAR-BINDING FILAMENT-LIKE PROTEIN 34 383 - -
Cla02g00660 449 Pfam Protein of unknown function (DUF760) 73 154 IPR008479 -
Cla02g00660 449 Pfam Protein of unknown function (DUF760) 259 374 IPR008479 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00660 - - - csv:101218281 645.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00660 Cla-Chr2:7575481 Cla10g01397 Cla-Chr10:29061889 7.49E-55 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g661 . . . . . Bpe12g00302 . . . Cmo11g01400 . . . . Sed06g0592 Cpe04g00310 . Bhi05g01055 Tan02g0996 Cmetu04g1635 Lac12g0194 . . . Cla02g00660 Cam02g0695 Cec02g0708 Cco02g0727 Clacu02g0701 Cmu02g0699 Cre02g1014 . . . . Lsi03g00555 Csa07g00704 . Cme01g00102 . . Bda15g00839 . . . . Bma08g00458 . . . Cma11g01715 . Car11g01126 . . . . . . . . . . . . . . . . . . . Chy01g00110 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009529 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00660 Cla_Chr02 FPKM 25.376646 27.933901 63.211349 64.867325 160.992355 168.556686 157.901428 37.056076 37.798347 36.517551