Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00679 ATGGAGCAACTCAATGGAAGCTTCACAGCTGATGATCAAGAAGAAGAAGCAACTTTCATGGCTCAATTACTCTTCAACACCACAAATTCCCCTGACCCTTTCATGGCTGCCCTTCCCTTTGAAACACCTTCTTCTTCAACCTTTTATAGCCTTTCTCAACAGACTAGTAATGGAAGTTATTGCAGCCAATTATTATTCCCAACTGAAAATAATAATAATTATTATTATTCTTGCAATCCCATGAATAATAATAATAATAATAATAATAATAATAATAATAATAATTCTTCATTGGGTGAGCTTGGAGATTATTACAATAACAATGGTGGTCATTTCCACACTGAAGATTATGAGGACTCTATGAATCTAGAGGTGAGTGAGAATAATTTTCAGCCTTGTCTTGAAGAAGCTGCCCATAACCAACTTGAGATCAATTGCAAGAAAAGATCAAGGGGAGGATTTGGGGATCATGTAGAGAAGGGGAGGAATGAGAGGCCAAAGAAAACTCAAAGGCTTATTACCTCAAGCAGCAACACTGAAGAAGATGGCAATGCTGGCCCTAGCAGGCAAAGCACAAGCAACTATTGCTCGGAAGACGAATCCAACACCTCTCTCGATCGAAACGGAGGAGCTAATAACTCGAGATCGAGTCCAAATGGTCCTACCAAATCGCGAGCCAGCAGAGGCTCAGCCACAGATCCACAGAGCCTCTATGCAAGAAAAAGAAGAGAAAGAATCAATGAGAGGTTGAGAATCTTACAGAATCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTACAACTCCAAATCAAGCTATTAAGCTCTGATGATTTATGGATGTACGCTCCGATCGCTTACAACGGAATGGATATCGGACTTAATCCGACCACCCCGAAAACACCAAAAGAGAAAGAATTATGA 960 40.0 MEQLNGSFTADDQEEEATFMAQLLFNTTNSPDPFMAALPFETPSSSTFYSLSQQTSNGSYCSQLLFPTENNNNYYYSCNPMNNNNNNNNNNNNNNSSLGELGDYYNNNGGHFHTEDYEDSMNLEVSENNFQPCLEEAAHNQLEINCKKRSRGGFGDHVEKGRNERPKKTQRLITSSSNTEEDGNAGPSRQSTSNYCSEDESNTSLDRNGGANNSRSSPNGPTKSRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNPTTPKTPKEKEL 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7836120 7838293 + ClCG02G006780.1 Cla02g00679 266805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00679 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 279 IPR011598 GO:0046983
Cla02g00679 319 MobiDBLite consensus disorder prediction 149 169 - -
Cla02g00679 319 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 19 307 - -
Cla02g00679 319 MobiDBLite consensus disorder prediction 149 243 - -
Cla02g00679 319 MobiDBLite consensus disorder prediction 170 234 - -
Cla02g00679 319 CDD bHLH_AtIND_like 231 293 - -
Cla02g00679 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 296 IPR036638 GO:0046983
Cla02g00679 319 SMART finulus 236 285 IPR011598 GO:0046983
Cla02g00679 319 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 19 307 - -
Cla02g00679 319 Pfam Helix-loop-helix DNA-binding domain 240 280 IPR011598 GO:0046983
Cla02g00679 319 Gene3D - 229 287 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00679 Cla-Chr2:7836120 Cla03g00820 Cla-Chr3:10472168 1.53E-25 dispersed
Cla10g00998 Cla-Chr10:23287766 Cla02g00679 Cla-Chr2:7836120 5.96E-62 wgd
Cla02g00679 Cla-Chr2:7836120 Cla05g02102 Cla-Chr5:32621736 7.00E-54 wgd
Cla02g00679 Cla-Chr2:7836120 Cla08g01617 Cla-Chr8:28777277 4.13E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60618 PF00010 HLH 1.20E-08 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00679 - - cmo:103495305 422.935