Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00682 ATGGCGGCGTTTCGGTCTGCATTCGATGCCGGGGAGATGAGAACCGAGTTCGAGAAGGCCGGCATCAAACCCACCTTCATCCCCTTCATTTGGAAGCATTTGCTTCACGATCCAAACAACCTATCCAGCCAGAATCTGGCATCCGAATTCGAATGGGAGCAAGCCGTGCCTTCGCTGCCGTCGGCGGCCTACTGCTTGCTCCGGTCAAAGTTCAAGCCTCTTACTTCCTCCGTCCATTCCGTCGTCGATTCCTCCGATCAGGTCACCACCAAACTCCTTATCAAGCTTCAGAGTGGAGCTTTTGTGGAGGCTGTCATCATGAGGTATGATACTCGTCTGGGAAAATATGCTGGCAAACCTCGTCCAGGTGGTCTGCGGTCTACTCTCTGTATTTCTTCACAGGTTGGCTGCAAAATGGGATGCAGATTCTGTGCAACTGGAACAATGGGCTATAAAAGCAATCTGACTTCAGGGGAGATAGTAGAGCAGTTGGTTCATGCCTCCCAGGTAGACCCTTTAGCTTTGGATGCACCCTTATGTGATTTCATTTTAAGCATTGTTAGTTTCTTCTACTCAGCATGGTATAGGCATGCTTGGACTGTATCATTTCTTTGCCAACATGGTGAAACATTATTCGTCGTTCAAAACTTGTGGAATGTAAGGTTGTGGCTCCATGTCTGTGTAATTGTTCTTGGATTGCTTGGAATGGGCGAACCATTGAATAACTATTCTGCTTTAGTGGAAGCTGTCCGTGCCATGATAGGCTCGCCGTTCTCATTATCACCCAAGAGAATTACTATCTCAACTGTTGGGATTATTCATGCTATAAACAAACTGCATGGTGATCTACCAGGATTGAACTTGGCTGTTTCCTTGCATGCACCTGTGCAAGATATTCGTTGTCAGATAATGCCTGCAGCTCGGGCTTTTCCTTTACAAAAACTTATGGATGCTCTCCAAGAATATCAAAAAAAGAGTCAGCAAAAGATATTAATCGAATACATAATGCTTGACGGAGTGAATGATGAGGAGGAACATGCCCACCAGCTCGGAAAATTGTTGGAGACATTCCAAGTGGTTGTGAACTTAATACCCTTCAATCCTATTGGTAGTTCAAGCCAATTCAGAACCAGTGGTGATGAGAAAGTTTCAGTATTTCAGAAAGTTCTACGAGGTACGTATAATATACGCACAACAGTCCGTAAGCAGATGGGTCAAGATATTAGTGGTGCATGTGGTCAACTGGTGGTCAGCCTGCCTAATAGAAGCTCTGGTAGACAAACTAGTGTTCTACCCGACATTGAAGATCTTCACCTTTGA 1320 45.38 MAAFRSAFDAGEMRTEFEKAGIKPTFIPFIWKHLLHDPNNLSSQNLASEFEWEQAVPSLPSAAYCLLRSKFKPLTSSVHSVVDSSDQVTTKLLIKLQSGAFVEAVIMRYDTRLGKYAGKPRPGGLRSTLCISSQVGCKMGCRFCATGTMGYKSNLTSGEIVEQLVHASQVDPLALDAPLCDFILSIVSFFYSAWYRHAWTVSFLCQHGETLFVVQNLWNVRLWLHVCVIVLGLLGMGEPLNNYSALVEAVRAMIGSPFSLSPKRITISTVGIIHAINKLHGDLPGLNLAVSLHAPVQDIRCQIMPAARAFPLQKLMDALQEYQKKSQQKILIEYIMLDGVNDEEEHAHQLGKLLETFQVVVNLIPFNPIGSSSQFRTSGDEKVSVFQKVLRGTYNIRTTVRKQMGQDISGACGQLVVSLPNRSSGRQTSVLPDIEDLHL 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7901070 7905759 + ClCG02G006820.1 Cla02g00682 266808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00682 439 PANTHER 23S RRNA METHYLTRANSFERASE 3 172 IPR040072 -
Cla02g00682 439 PIRSF Cfr 38 432 IPR004383 GO:0006364|GO:0008173
Cla02g00682 439 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 3 172 - -
Cla02g00682 439 SFLD adenosine C2 methyltransferase (RlmN-like) 58 422 IPR004383 GO:0006364|GO:0008173
Cla02g00682 439 SFLD methyltransferase (Class A) 58 422 - -
Cla02g00682 439 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 233 431 - -
Cla02g00682 439 ProSiteProfiles Radical SAM core domain profile. 123 407 IPR007197 GO:0003824|GO:0051536
Cla02g00682 439 PANTHER 23S RRNA METHYLTRANSFERASE 233 431 IPR040072 -
Cla02g00682 439 Gene3D Aldolase class I 76 179 IPR013785 -
Cla02g00682 439 Gene3D Aldolase class I 223 423 IPR013785 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00682 - - - csv:101215180 578.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00682 Cla-Chr2:7901070 Cla07g00299 Cla-Chr7:3377849 1.56E-40 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g704 . . . . . . . . Cmo19g00565 . . . . . . . Cpe15g00438 . . . . . . . Cla02g00682 Cam02g0716 Cec02g0729 Cco02g0751 Clacu02g0725 Cmu02g0723 Cre02g1035 Cone12ag1045 Cone8ag1078 . . Lsi03g00576 Csa07g00683 . Cme01g00121 . . . . . . . . . . . . Cma19g00551 . Car19g00409 . . . . . . . . . . . . . . . . . . Chy01g00131 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011647 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00682 Cla_Chr02 FPKM 12.399336 12.500168 13.61326 14.753325 20.287273 23.451649 22.932688 14.061464 15.279261 16.007599