Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00683 ATGGAAAAGAAGGAGACTGCTGGCGATGCCGATCGTCCATGGCAGTCTTACCACACTGTCTACACCAATGCAAAAGCCGGTATGGAAGGAGTTGACAAGGAGAAAGTGCAAAAAATTGTATATGAAATGAGTAAAGGGTCAAAATATTTTGAAAATGAGGAGCGGAAAGAGGCCGCCATCAGAGAAAAGATTGAGAGGATGCGAGCTAGGTGTGCACAGCTTGCTGCAACGGATCTTACTCAGTATCAAAAGGTTGCTGATAAAAGAATTTTGGAGCTGGAAAGTACACGTGATCTGTCAAGGATATGGTTGCATGTAGATATGGATGCTTTCTATGCCGCTGTTGAAACTTTAAGCAATCCTTTATTAAAGGGCAAGCCGATGGCTGTTGGTAACATGTCTATGCTTTCTACTGCTAACTATGAGGCTCGAAAGTATGGTGTTCGTGCTGCTATGCCTGGTTTTATTGCACGTAGATTATGTCCAGAGTTAATTTTTGTTCCCACGGATTTCGAAAAGTATAACTATTACAGTGATTTAACTAGAAAAGTATTTCATAGGTATGATCCCAACTTCTTGGCTGCTAGTCTGGATGAAGCATACCTCGATATAACTGAAGTCTGCAAAGAAAGAGGCCTTACAAGTGAAGAAATTGCTAAGGATCTCAGAACCAGTATTTATGAAGAGACTGGTCTTACGTGTAGTGCTGGGGTTGCTGCCAACCGACTGCTTGCCAAGGTTTGCTCTGATATTAACAAACCAAATGGACAGTTCATGTTACCAAATGACCGAAGAGCTATTGTTACATTCATATCATCACTACCCATAAGAAAGATTGGTGGGATTGGAAAGGTCACTGAACATATCTTAAAGGGTGCTTTGGGGATTAATACATGTGAGGAGATGCTACTAAAGGGTGGTCACCTCTGTGCGTTGTTTTCTCAATCCTCAGCAGGTTGGTGTTCGTTTGCTGCTGCAAGACAGAAACGTTGCTTTGATGTAGATGTAGTTATGCATTTTGGATTTTGTGATGTTCTAGTTACAAATTATTTCTTGTCGGTTGGGCTTGGCCTTGGGAGCACCGATACTCCACAGGTTAGATTGCGAAAGAGTATCAGCAATGAAAGAACTTTTGCAGCCACCACTGATGAAAGATTAATTTTTCAGAAACTTGCTGACCTTGCGGAGATGCTGTCAATGGACATGGACAAGGAAGGTCTAACTGGGCGGACACTGACTCTTAAACTAAAAACTGCATCCTTTGAGGTGAGAACCAGAGCTGTAACTTTGCAAAAATACATTTGCTCCAGCAGTGACATTTTGCAACATGCATCAAGGCTACTAAAGGCTGAACTGCCCATTTCTCTAAGACTAATTGGGCTGCGGATATCTCACTTCAATGAAGATGGAGCCGTTGCTGGGTCTGATCCGACCCAAACATCCATTACTAGATTTATTACATCAGGAGATGCTTCTAGAAAGATTATGAGTGACTGTTTCTCCTTGAATCATGATTCTAACAATCATGGTATCCTGGATGACACCGAAATTGATGTATGCATCAATGGTACTGATTCTGAAACACACCATCAAGATAGTAGTGATCAAAGAATCGACAACAATTTCTCGAATATGGATGACAGCAACTGTACGTCCAGCAATGACGCTGAGAAGTTGGAGAAACTTAAGAACCTTTTGAGCAACGTCAGCACTGATCAGGCAAATATTTTTAATACAGTAGGAAGCACCTCAGATTCCTCAGACGCTTTAGTCCCTCGAGTCTCGAGCACAGCATGTGCTTCATCAATAAACCTTGAAGGCAATCGCGAGAATAATGTGGATACCGAAAATCAGTTCGAGGTAGGATCACCAGATAACAATGGACAGATTTGGTGGATAGATGACTACAAATGTACAATCTGTGGTGCTGAAGTACCAGTGAGTTTTGTCGATGAAAGACAAGAGCACATAGATTTCCACATTGCGGAAAAACTTCAGGAAGAAGAATCTGGCATTCGTTCAAGAACCCTTACGCCCAGGAAAAGGACTCCTGACAAGAATCTACTGTCAAGTCAAAGGAAGCACCAAAAGCAAAAGTCAACTCCAAAGAAAGAGGTCAAACATGTTCCAATTGACTTATTCTTTGTTCATCATTTCATTTGTCTCCTGCAGCATCATAAGTTTGTACATTATTGTATAGTAATAAGTATTGTTCTCTGGATTGTGGTAAAGAAGCTGGCTGAGTGCCTGATCATTGCAATTTTTTATGGATAG 2274 41.38 MEKKETAGDADRPWQSYHTVYTNAKAGMEGVDKEKVQKIVYEMSKGSKYFENEERKEAAIREKIERMRARCAQLAATDLTQYQKVADKRILELESTRDLSRIWLHVDMDAFYAAVETLSNPLLKGKPMAVGNMSMLSTANYEARKYGVRAAMPGFIARRLCPELIFVPTDFEKYNYYSDLTRKVFHRYDPNFLAASLDEAYLDITEVCKERGLTSEEIAKDLRTSIYEETGLTCSAGVAANRLLAKVCSDINKPNGQFMLPNDRRAIVTFISSLPIRKIGGIGKVTEHILKGALGINTCEEMLLKGGHLCALFSQSSAGWCSFAAARQKRCFDVDVVMHFGFCDVLVTNYFLSVGLGLGSTDTPQVRLRKSISNERTFAATTDERLIFQKLADLAEMLSMDMDKEGLTGRTLTLKLKTASFEVRTRAVTLQKYICSSSDILQHASRLLKAELPISLRLIGLRISHFNEDGAVAGSDPTQTSITRFITSGDASRKIMSDCFSLNHDSNNHGILDDTEIDVCINGTDSETHHQDSSDQRIDNNFSNMDDSNCTSSNDAEKLEKLKNLLSNVSTDQANIFNTVGSTSDSSDALVPRVSSTACASSINLEGNRENNVDTENQFEVGSPDNNGQIWWIDDYKCTICGAEVPVSFVDERQEHIDFHIAEKLQEEESGIRSRTLTPRKRTPDKNLLSSQRKHQKQKSTPKKEVKHVPIDLFFVHHFICLLQHHKFVHYCIVISIVLWIVVKKLAECLIIAIFYG 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7906025 7913199 - ClCG02G006830.1 Cla02g00683 266809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00683 757 Gene3D - 367 471 IPR036775 GO:0003684|GO:0006281
Cla02g00683 757 Pfam impB/mucB/samB family C-terminal domain 369 471 IPR017961 GO:0003684|GO:0006281
Cla02g00683 757 ProSiteProfiles Zinc finger UBZ3-type profile. 631 668 IPR041298 -
Cla02g00683 757 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 7 695 - -
Cla02g00683 757 Gene3D - 111 170 - -
Cla02g00683 757 ProSiteProfiles UmuC domain profile. 103 283 IPR001126 GO:0006281
Cla02g00683 757 CDD PolY_Pol_IV_kappa 104 466 IPR022880 GO:0003887
Cla02g00683 757 SUPERFAMILY DNA/RNA polymerases 77 320 IPR043502 -
Cla02g00683 757 MobiDBLite consensus disorder prediction 526 550 - -
Cla02g00683 757 Pfam impB/mucB/samB family 106 250 IPR001126 GO:0006281
Cla02g00683 757 Gene3D - 255 327 - -
Cla02g00683 757 Pfam Ubiquitin-Binding Zinc Finger 634 668 IPR041298 -
Cla02g00683 757 MobiDBLite consensus disorder prediction 672 692 - -
Cla02g00683 757 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 367 464 IPR036775 GO:0003684|GO:0006281
Cla02g00683 757 Hamap DNA polymerase IV [dinB]. 100 482 IPR022880 GO:0003887
Cla02g00683 757 Gene3D - 21 107 - -
Cla02g00683 757 Gene3D - 108 254 IPR043128 -
Cla02g00683 757 PANTHER DNA POLYMERASE KAPPA 7 695 - -
Cla02g00683 757 Coils Coil 50 70 - -
Cla02g00683 757 MobiDBLite consensus disorder prediction 672 704 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00683 K03511 POLK; DNA polymerase kappa [EC:2.7.7.7] - csv:101212452 1172.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00651 Cla-Chr2:7446767 Cla02g00683 Cla-Chr2:7906025 3.27E-31 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g708 . . . . . . . . Cmo19g00564 . . . . . . . Cpe15g00437 . . . . . . . Cla02g00683 Cam02g0717 Cec02g0730 Cco02g0752 Clacu02g0726 Cmu02g0724 Cre02g1036 Cone12ag1043 Cone8ag1076 . . Lsi03g00577 Csa07g00682 . Cme01g00122 . . . . . . . . . . . . Cma19g00550 . Car19g00408 . . . . . . . . . . . . . . . . . . Chy01g00132 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011596 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00683 Cla_Chr02 FPKM 11.489501 9.471647 36.241852 39.647633 2.785926 3.725321 3.918692 29.83951 28.376217 31.540895