Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00689 ATGGCTAGCTTTTCAGGAACCACACAAAAGTGCATGGCTTGTGACAAGACAGTTTATCTTGTAGATAAGCTGACTGCTGATAATAGGATTTTCCATAAGGCTTGTTTCCGATGCTACCATTGTAGGGGCACTCTTAAGCTTAGCAACTATTGTTCCTTTGAGGGAGTGCTTTACTGCAGGCCTCACTATGATCAACTCTTCAAGAGAACTGGCAGCCTTGACAAGAGAACTCCAAAAGTCATGAAAGCAGAAAAGCCCACCGAAAATGAGAATGTAAAGTCAGTCTCCAACATGTTTGCTGGCACCAGAGACAAATGTTCAGGCTGTACCAAGACTGTTTATCCCATTGAAAAGCATAATAATAAAGTTTATACTATCGATTCTAAGGTTACGGTGAACGGGACGCCATACCACAAAAGCTGCTTCAAATGTAGCCATGGAGGATGCACAATAAGCCCATCAAATTACATAGCACATGAGGGAAAACTATATTGCAAACATCATCACATTCAACTATTCAAGGAGAAGGGAAATTACAGCCAACTTGAAACTGAGCGACAAAAGAACAATTCATCAGTGGCAATGAAATTAACCACTCCAATGGAAATTGCAGCTGAATCATAG 624 40.87 MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKRTPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIEKHNNKVYTIDSKVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKNNSSVAMKLTTPMEIAAES 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8025267 8026702 + ClCG02G007060.1 Cla02g00689 266815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00689 207 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Cla02g00689 207 CDD LIM1_SF3 7 69 - -
Cla02g00689 207 PANTHER OS06G0237300 PROTEIN 1 196 IPR045268 GO:0051015
Cla02g00689 207 ProSiteProfiles LIM domain profile. 104 175 IPR001781 -
Cla02g00689 207 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 1 196 - -
Cla02g00689 207 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 76 - -
Cla02g00689 207 Gene3D Cysteine Rich Protein 99 179 - -
Cla02g00689 207 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 142 - -
Cla02g00689 207 Pfam LIM domain 11 65 IPR001781 -
Cla02g00689 207 Pfam LIM domain 106 172 IPR001781 -
Cla02g00689 207 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Cla02g00689 207 CDD LIM2_SF3 106 177 - -
Cla02g00689 207 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 143 182 - -
Cla02g00689 207 Gene3D Cysteine Rich Protein 5 75 - -
Cla02g00689 207 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Cla02g00689 207 SMART lim_4 10 62 IPR001781 -
Cla02g00689 207 SMART lim_4 105 168 IPR001781 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00689 K09377 CSRP; cysteine and glycine-rich protein - csv:101214700 371.318
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00689 Cla-Chr2:8025267 Cla06g01642 Cla-Chr6:29924078 2.19E-83 dispersed
Cla02g00689 Cla-Chr2:8025267 Cla05g02110 Cla-Chr5:32704667 1.37E-95 wgd
Cla02g00689 Cla-Chr2:8025267 Cla08g01627 Cla-Chr8:28852514 1.32E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g720 . . . . . . . . Cmo19g00561 Cmo11g01422 . . . . Sed10g1170 Cpe04g00329 Cpe15g00434 Bhi05g01027 Tan02g1724 Cmetu03g1320 Lac12g0158 . . . Cla02g00689 Cam02g0721 Cec02g0735 Cco02g0757 Clacu02g0733 Cmu02g0729 Cre02g1040 . . . . Lsi03g00583 Csa07g00679 . Cme01g00126 . . . . . . . . . . . Cma11g01697 Cma19g00547 Car11g01146 Car19g00404 . . . . . . . . . . . . . . . . . . Chy01g00135 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000380 2 4 3 3 2 4 8 4 4 3 3 4 8 4 4 7 4 3 8 4 4 4 4 4 4 3 4 8 4 3 128
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60619 PF00412 LIM 1.10E-10 CL0167 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00689 Cla_Chr02 FPKM 1.199695 1.256626 16.719894 18.373459 27.288969 26.435894 30.171457 6.704131 5.992967 7.427987