Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00690 ATGGATCAAGAGTCACCCAATAATGAACAATTGCTCACTCGTATCCAACAGTTGGAATATGAGCGTGATGAGTTAAGGAAAGATATCGAACAATTATGTATGCAGCAATCTGGACCTGGTTACCTTTCTGTGGCTACTCGAATGCATTTTCAGAGGACAGCTGGCTTGGAACAGGAGATTGAGAACCTGAAAAAGAAGTTTGCTGCTTGTACCAGAGAGAATCACAATCTTCAAGAGGAACTTGCAGAAGCCTATAGAATTAAAAGTCAGCTGGCAGATCTGCACAGTTCAGAGGTCGCAAAGAATTTGGAATCGGAGAAGCAGCTTAAGTTTTTCCAAGGTTGTGTTGCTACTGCTTTTGCTGAACGGGATCATTCTATTATGGAGGCTGAGAAGGCGAAGGAGAAAGAAGAGTCACTGTCGCAAAAGCTTAAAGAGGTCCAAAATAGATTAGAGGAGTTGTCTTGTGACTGTCTGAATTTGAGGGAAACAAATGATACACTACGCATTAACCTAGCCAAGCAAGAAGAGTGGAATGAAGTTTCAAAAAAGATACTTGCATTCTTTATTTTGTTTGAGATTCTGATTAGCTATTTGGCCTTGGATGCTTGGAGGCGATGCATAGGCTACCGGATTGACGATGCGATAAGGGCACTATCGGAGAATATGGAGAGAATGTTGCGTCAAATGGATGAGCAACGTGAGATTGCAGCGGAGCAACATGAGAATATAGAATTGATGTTTAACAATTTCGAAGAGCAGAGACGAAGTGTTGGAAAGCACATTCCTAAATGGGCTGGACCCGGGAGTGAGGGCAGAGGTCCAATCCTTGATCCACGCTCTCTTGCTCCAGTTGGAGGAGATATTGGCAAGGGGCTTTACAAGGTAATCAATAAGTTTTATGAGATCAGACAGAATTCTTTTGAAGGATTTATGGATACTAGCTGGGACGAAAAATGTCAGTGTCTTTTACACGATCCTCCAGAAATGTGGAGTTTCAATGATTCTTCAACGTTGAGATATATAAATTCTTTGGAAGAAGGACTGGAGAAAATGAAGAAAACAGTGGACAATCTTCAAAATAAGCTACGGATGGGTGTGGAAATTGAAAAGCATTTAAAGCTGAAGGTGCATGATTTGGAAGTGAAGCTGATTCGCATGGATGATATGGTCAAGAGCAAGATTTCAGGGTTTTGTCAATACTATTCTCAATATCGAGATCAAATATTGAATTTATTGGACAAAGAAACGTCTAACATGAATTCGACAATAGGAGAGATTGAAGAAAAGATTATGCAATATGGCTGGGGAGTTCGAAATTTGAAGGATTGTGAGAAAGTGCTGAAAGCAGAAAATGATTCCCAGGATGAGCATTTGAGTACCAATGCCAAGATGAAAATTCCTGGCTTACCAGATTCCGTGGCTGATGGAAATGTTGAGGCCTCTGAAGCCCTCGCTTTGGCACTTCAAGAAAAGGTTTCAGCTCTGTTACTTCTTTCGCAACAGGAAGAGAGGCACATGCTGGAGAGAGATGTCAATGCAGCTCTTCAAAGAAAAACAGAGGAGCTCCAGAGAAACTTACTACAGGTTACCCATGAAAAAGTTAAAGCACTAATGGAGCTGGCACAAGTAAAGCAAGAACTTCAACTGCTTAAAGAGAAAAGTGTTCATGACTTTAAACGAGGAGTTGACACTGTGGAAAGAAAACTTGTTGCTAATGAGAGAGAGGGGAAACTAAAAGGCTTGCTGAAGGGTACGTATCTGAGACGTTGGGTAGGTACACCAGAAATCAGTGGAAGTGGAGCTGCAGCTCATGTGGATAATGAAGAAAAATACTCTTCTCGGAAGTCTGCTGTGGATTTTGCCAGAATGAAAATTGAAAATGCAACTCTTAGAGAAAGTATTGAAAGCATGGAGCAACTGACTTCTTCAATTCACAGGCTTCGTCTCTCTCTTCTGAAGGCTAAAGAGTCTGTTACTTCTGAAGGTCCAGCTACAAGTGTGTTGGAATCTCTCAAGGGCATAATCAATGAAGCAAAACAAATAAAGACTGCACTTAGCAGCTCCTTACCAATTATTTGGTCAGCTGATGTAAATACTGGATCCAGTGAGGAAACTTTACATGATTCATGTGATGTTTTAGGAGGAGACTCTAGCCTGGGAAAGATAGATTTTGTCTCTGCTGCTGGTTTTGAGATGGTCGAGCTCCTTGTTTCTGTTGCTGAGTTGTTGTTAAAGGATTACATGGCTGAAAGTGGTTCTTGA 2265 41.28 MDQESPNNEQLLTRIQQLEYERDELRKDIEQLCMQQSGPGYLSVATRMHFQRTAGLEQEIENLKKKFAACTRENHNLQEELAEAYRIKSQLADLHSSEVAKNLESEKQLKFFQGCVATAFAERDHSIMEAEKAKEKEESLSQKLKEVQNRLEELSCDCLNLRETNDTLRINLAKQEEWNEVSKKILAFFILFEILISYLALDAWRRCIGYRIDDAIRALSENMERMLRQMDEQREIAAEQHENIELMFNNFEEQRRSVGKHIPKWAGPGSEGRGPILDPRSLAPVGGDIGKGLYKVINKFYEIRQNSFEGFMDTSWDEKCQCLLHDPPEMWSFNDSSTLRYINSLEEGLEKMKKTVDNLQNKLRMGVEIEKHLKLKVHDLEVKLIRMDDMVKSKISGFCQYYSQYRDQILNLLDKETSNMNSTIGEIEEKIMQYGWGVRNLKDCEKVLKAENDSQDEHLSTNAKMKIPGLPDSVADGNVEASEALALALQEKVSALLLLSQQEERHMLERDVNAALQRKTEELQRNLLQVTHEKVKALMELAQVKQELQLLKEKSVHDFKRGVDTVERKLVANEREGKLKGLLKGTYLRRWVGTPEISGSGAAAHVDNEEKYSSRKSAVDFARMKIENATLRESIESMEQLTSSIHRLRLSLLKAKESVTSEGPATSVLESLKGIINEAKQIKTALSSSLPIIWSADVNTGSSEETLHDSCDVLGGDSSLGKIDFVSAAGFEMVELLVSVAELLLKDYMAESGS 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8033480 8057238 - ClCG02G007070.1 Cla02g00690 266816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00690 754 Coils Coil 216 247 - -
Cla02g00690 754 Coils Coil 498 554 - -
Cla02g00690 754 PANTHER MYOSIN HEAVY CHAIN-LIKE PROTEIN 1 189 - -
Cla02g00690 754 PANTHER MYOSIN HEAVY CHAIN-LIKE PROTEIN 294 746 - -
Cla02g00690 754 Coils Coil 8 35 - -
Cla02g00690 754 Coils Coil 127 171 - -
Cla02g00690 754 Coils Coil 621 641 - -
Cla02g00690 754 Coils Coil 342 362 - -
Cla02g00690 754 Coils Coil 53 80 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00690 - - - csv:101211967 760.755
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g721 . . . . . . . . Cmo19g00558 . . . . . . . Cpe15g00433 Bhi05g01026 . . . . . . Cla02g00690 Cam02g0722 Cec02g0738 Cco02g0760 Clacu02g0734 Cmu02g0730 Cre02g1041 . Cone8ag1074 . . Lsi03g00584 Csa07g00678 . Cme01g00127 . . . . . . . . . . . . Cma19g00545 . Car19g00403 . . . . . . . . . . . . . . . . . . Chy01g00136 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004516 1 9 2 1 0 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00690 Cla_Chr02 FPKM 5.41349 5.326314 14.178347 14.387676 40.341873 41.513149 42.65073 16.951113 17.461649 16.00569