Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00698 ATGAGGGAGTGCATCTCGATTCACATAGGTCAGGCAGGGATTCAGGTTGGCAATGCATGCTGGGAACTGTACTGCCTTGAACATGGAATTCAGATTTTGAATGAATTTCTAAACGGTACGTATCAATTGCGTGATTTTGCTGGAGGCGATGATGCCTTCAACACCTTCTTCAGTGAAACAGGTGCAGGCAAGCATGTTCCTCGTGCTGTTTTTGTTGATCTCGAGCCTACTGTCATTGATGAGGTGAGGACTGGAATGTATCGCCAATTGTTCCATCCTGAACAGCTAATCAGCGGCAAAGAAGATGCTGCCAACAACTTTGCTCGTGGCCATTACACCATTGGCAAGGAGATTGTTGATCTCTGTTTGGATCGCATTAGAAAGCTCGCTGACAACTGCACTGGACTTCAAGGCTTCCTGGTGTTTAACGCTGTTGGTGGGGGTACTGGATCTGGTCTTGGCTCCCTCCTTTTGGAGCGTTTGTCTGTTGACTATGGCAAGAAATCAAAGCTTGGTTTCACTGTTTATCCCTCTCCACAAGTTTCCACCTCTGTTGTTGAACCTTACAACAGTGTTCTTTCAACCCATTCCCTCCTTGAACATACAGATGTTTCTGTGCTTCTTGACAATGAGGCCATTTATGACATCTGTAGACGCTCCCTTGACATTGAGCGACCAACATACACAAACCTCAACCGTCTCATCTCTCAGGTGATTTCGTCCTTGACAGCCTCTCTACGGTTCGATGGAGCTCTGAATGTAGACGTCACTGAGTTCCAAACGAATTTAGTCCCTTACCCAAGAATCCACTTCATGCTTTCCTCCTATGCCCCTGTGATCTCTGCAGAGAAGGCCTACCATGAACAGCTCTCTGTAGCGGAGATCACCAACAGCGCATTCGAGCCATCTTCCATGATGGCCAAGTGCGATCCCCGCCATGGGAAGTACATGGCTTGCTGTCTGATGTATCGAGGAGATGTTGTTCCGAAGGACGTCAATGCCGCTGTTGCAACCATCAAAACCAAGCGCACGATCCAGTTCGTGGATTGGTGCCCCACTGGTTTCAAGTGTGGCATTAACTACCAGCCGCCAACGGTGGTTCCGGGCGGTGACCTTGCCAAGGTGCAGAGGGCAGTGTGTATGATCTCCAACTCGACCAGCGTAGCGGAGGTGTTCTCTCGCATAGACCATAAGTTTGATCTGATGTATGCAAAGAGGGCCTTTGTGCATTGGTACGTGGGGGAGGGCATGGAGGAGGGAGAGTTCTCTGAAGCTCGCGAGGATCTTGCGGCGCTTGAGAAGGATTATGAGGAAGTGGGCGCTGAGTCTGGTGAAGGTGATGATGAAGATGAGGAGTACTGA 1362 49.41 MRECISIHIGQAGIQVGNACWELYCLEHGIQILNEFLNGTYQLRDFAGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGMYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESGEGDDEDEEY 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8209788 8212961 + ClCG02G007140.2 Cla02g00698 266824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00698 453 Gene3D - 273 387 IPR037103 -
Cla02g00698 453 PANTHER TUBULIN ALPHA CHAIN 1 448 - -
Cla02g00698 453 Gene3D Helix hairpin bin 388 440 IPR023123 -
Cla02g00698 453 PRINTS Tubulin signature 157 178 IPR000217 GO:0005874|GO:0007017
Cla02g00698 453 PRINTS Tubulin signature 196 216 IPR000217 GO:0005874|GO:0007017
Cla02g00698 453 PRINTS Tubulin signature 57 76 IPR000217 GO:0005874|GO:0007017
Cla02g00698 453 PRINTS Tubulin signature 99 110 IPR000217 GO:0005874|GO:0007017
Cla02g00698 453 PRINTS Tubulin signature 182 195 IPR000217 GO:0005874|GO:0007017
Cla02g00698 453 PRINTS Tubulin signature 384 412 IPR000217 GO:0005874|GO:0007017
Cla02g00698 453 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Cla02g00698 453 PRINTS Tubulin signature 112 136 IPR000217 GO:0005874|GO:0007017
Cla02g00698 453 PRINTS Tubulin signature 138 156 IPR000217 GO:0005874|GO:0007017
Cla02g00698 453 Coils Coil 422 442 - -
Cla02g00698 453 CDD alpha_tubulin 2 439 - -
Cla02g00698 453 PANTHER TUBULIN 1 448 IPR000217 GO:0005874|GO:0007017
Cla02g00698 453 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 248 IPR036525 -
Cla02g00698 453 MobiDBLite consensus disorder prediction 434 453 - -
Cla02g00698 453 Pfam Tubulin C-terminal domain 267 396 IPR018316 -
Cla02g00698 453 SMART Tubulin_4 53 250 IPR003008 GO:0005525
Cla02g00698 453 Gene3D Tubulin/FtsZ, GTPase domain 1 272 IPR036525 -
Cla02g00698 453 Pfam Tubulin/FtsZ family, GTPase domain 3 217 IPR003008 GO:0005525
Cla02g00698 453 PRINTS Alpha-tubulin signature 364 383 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla02g00698 453 PRINTS Alpha-tubulin signature 124 132 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla02g00698 453 PRINTS Alpha-tubulin signature 351 364 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla02g00698 453 PRINTS Alpha-tubulin signature 92 105 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla02g00698 453 PRINTS Alpha-tubulin signature 218 230 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla02g00698 453 PRINTS Alpha-tubulin signature 165 176 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla02g00698 453 PRINTS Alpha-tubulin signature 278 293 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla02g00698 453 PRINTS Alpha-tubulin signature 18 33 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla02g00698 453 PRINTS Alpha-tubulin signature 389 405 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla02g00698 453 PRINTS Alpha-tubulin signature 325 346 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla02g00698 453 PRINTS Alpha-tubulin signature 49 62 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla02g00698 453 PRINTS Alpha-tubulin signature 152 164 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla02g00698 453 PRINTS Alpha-tubulin signature 426 442 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla02g00698 453 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 146 152 IPR017975 GO:0005525|GO:0005874|GO:0007017
Cla02g00698 453 SUPERFAMILY Tubulin C-terminal domain-like 250 440 IPR008280 -
Cla02g00698 453 SMART Tubulin_C_4 252 397 IPR018316 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00698 K07374 TUBA; tubulin alpha - csv:101213258 828.165
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01757 Cla-Chr1:32483486 Cla02g00698 Cla-Chr2:8209788 0 dispersed
Cla02g00698 Cla-Chr2:8209788 Cla10g01281 Cla-Chr10:27640563 0 dispersed
Cla10g00961 Cla-Chr10:22603977 Cla02g00698 Cla-Chr2:8209788 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g770 Blo02g00917 Blo03g00060 Bda06g01159 . Bpe07g00293 . . Bma12g00302 Cmo19g00553 Cmo11g01429 . . . . . Cpe04g00335 Cpe15g00428 . . . . . . . Cla02g00698 Cam02g0731 Cec02g0746 Cco02g0770 Clacu02g0742 Cmu02g0737 Cre02g1050 . . . . Lsi03g00600 Csa07g00669 . Cme01g00135 . . . . . . . . Sed07g1149 Cmo04g00462 Cmo16g00324 Cma11g01691 Cma19g00539 Car11g01152 Car19g00396 Cpe14g00253 Cpe01g00388 Bhi11g01102 Tan01g0605 Cmetu08g1396 . Hepe07g0394 Mch10g0408 . . . . . . . . Lsi03g01006 . Chy01g00146 Cme07g02211
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000221 6 4 6 6 4 5 8 5 5 5 5 5 8 5 5 9 5 12 9 5 5 4 4 5 5 4 5 6 3 5 168
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00698 Cla_Chr02 FPKM 109.685234 123.193497 199.610626 200.537964 15.974942 18.643961 16.660137 599.913452 583.13446 552.844299