Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00706 ATGTTGCTCACAATTGGTTTTGAGGAAACTTCATCGTCGGTTGGGAATGCGATCAAAGTCACGAGGGTGACGTTTATACCCAAAACGGACAACATCAACCACTGTAGGGATATCAGGAGATTTGTGGTCCCTGACACTATCTTTATATCTAATACACTCAAAGTTAACCATCCATCTATAAATTGCCCCAACCATAAGTACCTTTTCCTCATCCAAACCTCAATACCACACCTAACAAACAATATGTGTTTTCTCAAACTCATGAGTGTTTTTCAGCTCTATTTTCTTTTCTTGACCCTTGTAGTTAAATCTTCTTATGCCCAAAACTCAGCTCAAGACTACATTAATGGCCACAACTCAGCAAGATCAATAGTGGGTGTTGGAAATATTGTATGGAACACAACTCTTGCAGCCTATGCTCAAACATATGCCAACTCAAGGAAAGCTGATTGCCAATTGGTGCATTCCAATGGGCCTTATGGAGAGAACCTTGCAAAGGGAAACAATGGATTCACTGGCTCAGCAGCAGTGAAGCTATGGGTTGATGAAAAGTCTTACTATAGTCATAATAACAATGCTTGTGTTGGTGGTGAGTGTCTTCATTACACGCAAGTTGTTTGGCAAAGCTCTTATAGAGTTGGGTGTGCAAGAGTTCAATGCAACGATGGTTGGTGGTTTGTGTCTTGCAATTATGATCCTCCAGGCAATTGGGATGGGGAGTGGCCTTATTAG 732 41.39 MLLTIGFEETSSSVGNAIKVTRVTFIPKTDNINHCRDIRRFVVPDTIFISNTLKVNHPSINCPNHKYLFLIQTSIPHLTNNMCFLKLMSVFQLYFLFLTLVVKSSYAQNSAQDYINGHNSARSIVGVGNIVWNTTLAAYAQTYANSRKADCQLVHSNGPYGENLAKGNNGFTGSAAVKLWVDEKSYYSHNNNACVGGECLHYTQVVWQSSYRVGCARVQCNDGWWFVSCNYDPPGNWDGEWPY 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8362468 8363279 + ClCG02G007220.2 Cla02g00706 266832

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00706 243 Pfam Cysteine-rich secretory protein family 116 231 IPR014044 -
Cla02g00706 243 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 94 243 IPR001283 -
Cla02g00706 243 ProSitePatterns CRISP family signature 2. 226 237 IPR018244 GO:0005576
Cla02g00706 243 PANTHER CAP (CYSTEINE-RICH SECRETORY PROTEINS, ANTIGEN 5, AND PATHOGENESIS-RELATED 1 PROTEIN) SUPERFAMILY PROTEIN 94 243 - -
Cla02g00706 243 SMART SCP_3 109 239 IPR014044 -
Cla02g00706 243 Gene3D CAP 108 243 IPR035940 -
Cla02g00706 243 PRINTS Allergen V5/Tpx-1 family signature 176 189 IPR001283 -
Cla02g00706 243 PRINTS Allergen V5/Tpx-1 family signature 199 215 IPR001283 -
Cla02g00706 243 PRINTS Allergen V5/Tpx-1 family signature 226 239 IPR001283 -
Cla02g00706 243 PRINTS Allergen V5/Tpx-1 family signature 130 148 IPR001283 -
Cla02g00706 243 SUPERFAMILY PR-1-like 108 243 IPR035940 -
Cla02g00706 243 CDD CAP_PR-1 111 243 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00706 K13449 PR1; pathogenesis-related protein 1 - csv:101211573 300.056
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00706 Cla-Chr2:8362468 Cla02g00718 Cla-Chr2:8518115 1.86E-61 dispersed
Cla02g00705 Cla-Chr2:8340033 Cla02g00706 Cla-Chr2:8362468 1.90E-55 tandem
Cla02g00706 Cla-Chr2:8362468 Cla02g00707 Cla-Chr2:8373698 5.56E-50 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g793 . . Bda06g01148 . . . . . . . . . . . . . . . . . . . . . Cla02g00706 Cam02g0740 Cec02g0754 Cco02g0780 Clacu02g0749 Cmu02g0743 Cre02g1057 . . . . Lsi03g00622 Csa07g00663 . Cme01g00140 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00151 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00706 Cla_Chr02 FPKM 9.311028 9.945738 14.714602 13.94358 5.380133 4.159819 4.802185 21.985691 22.922352 24.48218