Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00708 ATGTCGAAAATGGCACTCGCCAACGTTCTCTCCACCATTTGCATGTTTGCGCTAACCCTAACCCCCATCGTCATTGCTCAAAACACCCCTGACGACTTCGTCAACGAGCACAATGCAGTTCGAGCCAAGGTCGGGGCTGAACCCCTCTTTTGGGATGAAGAACTTGCAACTTATGCTAAAAATTACATCACGTCGAAGATTAAAACATGCGAGATGGTGCACTCCAATGGCCCTTACGGAGAGAACTTGGCCACAGTAAACGGCGAGTTGACCGCAGCAGCTGCCGTGAAGGCATGGGCGGATGAAAAGAAGTTTTATGACCACAATTCCAACAAATGTGTGGGGGGCGAGTGTCGACATTATACACAATTGGTGTGGAAGAAAAGTTTCTTGGTGGGTTGTGCTACTGTTAAATGCAAAAACAATTGGTCTTTACTCTCATGCAACTATAGTCCTTCTGGTAATGTTGTAGGTGAGCTACCTTATTAG 489 46.63 MSKMALANVLSTICMFALTLTPIVIAQNTPDDFVNEHNAVRAKVGAEPLFWDEELATYAKNYITSKIKTCEMVHSNGPYGENLATVNGELTAAAAVKAWADEKKFYDHNSNKCVGGECRHYTQLVWKKSFLVGCATVKCKNNWSLLSCNYSPSGNVVGELPY 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8393294 8393782 - ClCG02G007240.1 Cla02g00708 266834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00708 162 CDD CAP_PR-1 30 162 - -
Cla02g00708 162 PANTHER PATHOGENESIS-RELATED PROTEIN 1 21 162 - -
Cla02g00708 162 SMART SCP_3 28 158 IPR014044 -
Cla02g00708 162 Pfam Cysteine-rich secretory protein family 35 150 IPR014044 -
Cla02g00708 162 Gene3D CAP 28 162 IPR035940 -
Cla02g00708 162 ProSitePatterns CRISP family signature 1. 119 129 IPR018244 GO:0005576
Cla02g00708 162 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 21 162 IPR001283 -
Cla02g00708 162 ProSitePatterns CRISP family signature 2. 145 156 IPR018244 GO:0005576
Cla02g00708 162 PRINTS Allergen V5/Tpx-1 family signature 49 67 IPR001283 -
Cla02g00708 162 PRINTS Allergen V5/Tpx-1 family signature 95 108 IPR001283 -
Cla02g00708 162 PRINTS Allergen V5/Tpx-1 family signature 118 134 IPR001283 -
Cla02g00708 162 PRINTS Allergen V5/Tpx-1 family signature 145 158 IPR001283 -
Cla02g00708 162 SUPERFAMILY PR-1-like 20 162 IPR035940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00708 K13449 PR1; pathogenesis-related protein 1 - csv:101211487 275.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00708 Cla-Chr2:8393294 Cla02g00718 Cla-Chr2:8518115 1.50E-67 dispersed
Cla02g00707 Cla-Chr2:8373698 Cla02g00708 Cla-Chr2:8393294 2.53E-87 tandem
Cla02g00708 Cla-Chr2:8393294 Cla02g00709 Cla-Chr2:8405309 4.10E-67 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g795 . . Bda06g01147 . Bpe07g00299 . . Bma12g00311 Cmo19g00542 . . . . . . Cpe04g00337 Cpe15g00421 . . . . . . . Cla02g00708 Cam02g0744 Cec02g0756 Cco02g0783 Clacu02g0751 Cmu02g0745 Cre02g1060 Cone12ag1024 Cone8ag1057 . . Lsi03g00624 Csa07g00662 . Cme01g00141 . . . . . . . . . . . . Cma19g00533 . . . . . . . . . . . . . . . . . . . . Chy01g00152 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005602 0 1 0 0 0 3 0 2 2 2 2 3 4 2 1 1 3 0 3 2 1 1 0 1 1 2 2 0 1 0 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00708 Cla_Chr02 FPKM 9.034636 12.144935 8.587268 9.461887 9.70463 10.638068 7.928818 9.325652 11.811602 10.203753