Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00709 ATGGCTTCCCCCACCATTTTTTTCTCTACCATATGTTTGGTAGGTTTCCTCCTTGCTACCATCTCCAAGGCCCAAAACGATCCCCAAGACTTTGTCGATACCCATAACGTCATTCGAGCAGCGGTTGGTGTCGGGCCAGTCTCTTGGGATGACACTCTAGCCACCTATGCTCAAAATTACGCTGATAGTAAGATCGATACCTGTGAGATGGAGCACTCCAATGGACCCTACGGTGAAAACCTCGCAGAGGGGTATGACGAGATGACGGCGGTGGAGGCGGTGAAGTTTTGGGCGACCGAGAAAAAGTTCTACAACCACCATTTGAACCGGTGCATCGGGGATGAGTGTGGCCACTATACGCAAATAGTGTGGAGGGACACTAAAAACATAGGGTGTGCTAGGGTGAAGTGTGAGAACAATTGGGTTTTTGTGATATGCAACTATAATCCTCCGGGGAACTATATAGGCCAACATCCTTACTAA 483 48.65 MASPTIFFSTICLVGFLLATISKAQNDPQDFVDTHNVIRAAVGVGPVSWDDTLATYAQNYADSKIDTCEMEHSNGPYGENLAEGYDEMTAVEAVKFWATEKKFYNHHLNRCIGDECGHYTQIVWRDTKNIGCARVKCENNWVFVICNYNPPGNYIGQHPY 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8405309 8405791 - ClCG02G007250.1 Cla02g00709 266835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00709 160 CDD CAP_PR-1 28 160 - -
Cla02g00709 160 ProSitePatterns CRISP family signature 2. 143 154 IPR018244 GO:0005576
Cla02g00709 160 PANTHER - 13 160 - -
Cla02g00709 160 Pfam Cysteine-rich secretory protein family 33 148 IPR014044 -
Cla02g00709 160 SUPERFAMILY PR-1-like 26 160 IPR035940 -
Cla02g00709 160 SMART SCP_3 26 156 IPR014044 -
Cla02g00709 160 PRINTS Allergen V5/Tpx-1 family signature 47 65 IPR001283 -
Cla02g00709 160 PRINTS Allergen V5/Tpx-1 family signature 93 106 IPR001283 -
Cla02g00709 160 PRINTS Allergen V5/Tpx-1 family signature 116 132 IPR001283 -
Cla02g00709 160 PRINTS Allergen V5/Tpx-1 family signature 143 156 IPR001283 -
Cla02g00709 160 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 13 160 IPR001283 -
Cla02g00709 160 ProSitePatterns CRISP family signature 1. 117 127 IPR018244 GO:0005576
Cla02g00709 160 Gene3D CAP 25 160 IPR035940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00709 K13449 PR1; pathogenesis-related protein 1 - csv:101211323 306.219
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00709 Cla-Chr2:8405309 Cla02g00718 Cla-Chr2:8518115 6.29E-83 dispersed
Cla02g00711 Cla-Chr2:8444428 Cla02g00709 Cla-Chr2:8405309 2.66E-11 dispersed
Cla02g00708 Cla-Chr2:8393294 Cla02g00709 Cla-Chr2:8405309 4.10E-67 tandem
Cla02g00709 Cla-Chr2:8405309 Cla02g00710 Cla-Chr2:8420057 1.05E-62 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g799 Blo02g00914 . Bda06g01146 . Bpe07g00300 . . Bma12g00312 Cmo19g00541 . . . . . . . Cpe15g00420 . . . . . . . Cla02g00709 Cam02g0746 Cec02g0757 Cco02g0784 Clacu02g0752 Cmu02g0746 Cre02g1061 . Cone8ag1053 . . Lsi03g00626 Csa07g00658 . Cme01g00144 . . . . . Bpe05g00458 . . . . . Cma11g01690 Cma19g00532 . . . Cpe01g00380 . . . . . . . . . . . . . . . . Chy01g00153 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002412 6 2 3 5 3 2 0 2 2 2 2 2 2 2 2 2 2 1 1 2 2 4 0 2 1 0 2 2 2 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00709 Cla_Chr02 FPKM 30.062696 30.14888 2.115892 2.295327 1.808567 1.948814 1.199103 1.143718 1.574566 1.000286