Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00724 ATGACTAATTCACCATTTCCCGCCGGAAAACCCTCCCGCCGCCGGCCTCCTCCGGTGGCTCTCCTCCTCCTCCTCTGTTCACTTTCCCTCTCCCATGGTGATGAACTTCTCCCACTTTTAGACCTCAAATCTGCCCTCTCCAACAACTCAACCTTCTCCTCTTCTTTGGTTTTCAACTCTTGGATTAAAGGAAATGATGTTTGCAGCAGCTTCCATGGCATTGTCTGTGATTCCAATGGCTTTGTAGTGGAAATCAATCTCTCTGCTCACAACTTATCTGGGATTCTTCCTTTTGATTCCATTTGCTCTTTGCAATCCCTTGAGAAGTTGTCTTTTGGGTCTAATTTTTTGTATGGGAAGGTCAGTGACGGTTTGAGAAACTGTTCCAAGTTGAAGTATTTGGATTTGGGTCAGAATGTGTTTTCTGGTGAAGTACCTGATTTGTCTTCTTTAGTGGGATTGAGATTCTTGAGCTTGAATAACAGTGGGTTTTCTGGAGATTTTCCTTGGAAATCTCTTCTTAATCTTACTGATTTGGAGTTCTTAAGCCTTGGAGACAATATATTTAACCCAACAACTTCATTCCCATCAGAAATTCTCGACCTTAAGAACCTTCGTTGGCTTTACCTCTCTAACTGCACAATTCATGGAGAAATCCCATCAAGGATTGGGAACCTTTCTTTGCTTGAGAATCTTGAGCTCTCACAAAATAAACTCACAGGTGAAATTCCTTCTGAGATTGTGAACCTGAAGAAGCTATGGCAGCTGGAGTTGCATGAGAATTCCTTGACCGGGAAGCTCCCGGTCGGGTTTTGTAACCTTACTGGACTGAGGAAGTTTGATGCCTCATCTAATAATCTTGTAGGTGATTTGATGGAGTTGAGGTTCTTGACCAATCTGGAGTCCTTGCAGCTCTTTGAAAATCAATTTTCCGGTACGATTCCGGAGGAGTTTGGGGACTTTAGGGACCTTGTTGAACTCTCTCTTTACCAAAACAAGCTCACTGGCAACCTCCCTCAAAGAATTGGATCTTGGGCAGCCTTCATTTTCATTGATGTTTCGGAGAATTTCTTGTCTGGACCTATACCTCCAGACATGTGCAAGCAGGGCAATATGACTGATCTCTTGATGTTGCAAAACAATTTCATTGGTGGAATCCCAGAAAGCTACATGAACTGTACATCTTTGAATCGATTTCGTGTAAACAATAACTCTCTTTCGGGTGTTGTTCCTGCTGGGATTTGGAGTCTGCCAAATCTTACCATCATTGATCTTTCAATGAATCAGTTTGAAGGTCCTGTGACTTCGGATATCAGTAAAGCAAAAGCTCTTGCTCAGTTATTCTTATCGAATAACCGGTTTTCTGGAAACTTACCGGCTGAGCTTGGTGAAGTATCATCCTTAGTCTCAATCAAGCTCGATTCGAACCAATTTGTTGGTCAAATACCCGAATCACTTGGCAAGTTGAAGGACTTAAGCAGCCTTTCTTTGAACAACAACAAATTTTCCGAAAACATACCTAACTCATTAGGCTCTTGCAGTTCTCTTTCTACCATAGATCTATCTATGAACTCATTCTCCGGGTATATTCCGGAGAATCTTGGTTACTTGCCAATTCTAAACTCCTTGAATCTTTCTAACAATAAACTTTCAGGTGAAATTCCAACTAGTTTTTCGCAGTTGAAGCTAAGCAGTTTGGACCTGTCTAATAACAGGTTAATTGGCCAAGTACCTGAATCACTCGCAATCCAAGCCTTTGATGAAAGTTTCATGGGAAATCCTGGCTTGTGCAGTGACTCTCTCGGATACTTGAGTTCATGTTCACCAACCTCTAGATCATCCAGCCATCTCAGCTCGTTGCTGTCATGTACCATTGCTGGAATCCTAGTGTTGCTCATGTCCTTCTCGTTCTTGTTGTTTGTTAAATGGAAACGTAACAAGGATGCTAAGCATTTACTGATATCCAAATCGTGGGATATGAAGCCGTTCCGAATAGTGTGCTTCACGGAAAAGGAAATCATTGATTCAATCAATTCTCACAACTTGATAGGAAGAGGAGGATCTGGAAATGTTTACAAAGTCGTACTAAGTAATGGCAAAGAACTCGCTGTGAAACATATATGGCAGTCAAGCTCCAGGGACCAAGCAAATTGTCGGACCAGTGCAACCATGTTAACTAAAAGAAAGACCAGGTCATCTGAATATGATGCAGAAGTAGCTACATTGAGTTCAGTGAGGCATAACAATGTGGTGAAATTATACTGCAGCATTTCGAGCGAGGATAGTAACCTGTTGGTCTACGAGTACTTACCAAATGGAAGTTTATGGGATCAGCTGCACACTAGCAGGAAGATTGAGATGGGATGGAAGATAAGGTACGAGGTAGCGGTTGGAGCAGCAAGGGGACTTGAGTATTTACATCATGGGTGTGACCGACCTGTTATTCACCGAGATGTGAAGTCGAGTAATATTTTGTTGGATAGTGATTGGAAACCTAGGATTGCAGATTTTGGGCTAGCTAAGATTCTGCAGGATGGCCATGGGGTTGGAGATTCATCTCATGTCATTGCTGGAACACTCGGTTATATAGCCCCTGAATATGCATACACGTGCAAGATAAACGAGAAGAGTGACGTTTACAGCTTCGGAGTTGTCCTAATGGAACTAGTAACAGGAAAGCAGCCCAATGAGCCAGAGTTTGGGGAGAACAAAGACATTGTACAATGGGCACACAGCAGAATGAGAGACCTAAAAGGTAATCTGAAAGATATGGTAGATCCTAGCATCTCAGAGGCTCAAGTGGAGGATGCCGTCAAAGTGCTAAGAATCGCACTTCGCTGCACGGCTAAGATTCCATCTACAAGGCCCTCGATGAGAATGGTAGTTCATATGCTTGAAGAGGCTGAGCCTTATAACTTTATTGACGTTGTGGTCAAGAAAGAATGTGAAAAGTAA 2955 42.57 MTNSPFPAGKPSRRRPPPVALLLLLCSLSLSHGDELLPLLDLKSALSNNSTFSSSLVFNSWIKGNDVCSSFHGIVCDSNGFVVEINLSAHNLSGILPFDSICSLQSLEKLSFGSNFLYGKVSDGLRNCSKLKYLDLGQNVFSGEVPDLSSLVGLRFLSLNNSGFSGDFPWKSLLNLTDLEFLSLGDNIFNPTTSFPSEILDLKNLRWLYLSNCTIHGEIPSRIGNLSLLENLELSQNKLTGEIPSEIVNLKKLWQLELHENSLTGKLPVGFCNLTGLRKFDASSNNLVGDLMELRFLTNLESLQLFENQFSGTIPEEFGDFRDLVELSLYQNKLTGNLPQRIGSWAAFIFIDVSENFLSGPIPPDMCKQGNMTDLLMLQNNFIGGIPESYMNCTSLNRFRVNNNSLSGVVPAGIWSLPNLTIIDLSMNQFEGPVTSDISKAKALAQLFLSNNRFSGNLPAELGEVSSLVSIKLDSNQFVGQIPESLGKLKDLSSLSLNNNKFSENIPNSLGSCSSLSTIDLSMNSFSGYIPENLGYLPILNSLNLSNNKLSGEIPTSFSQLKLSSLDLSNNRLIGQVPESLAIQAFDESFMGNPGLCSDSLGYLSSCSPTSRSSSHLSSLLSCTIAGILVLLMSFSFLLFVKWKRNKDAKHLLISKSWDMKPFRIVCFTEKEIIDSINSHNLIGRGGSGNVYKVVLSNGKELAVKHIWQSSSRDQANCRTSATMLTKRKTRSSEYDAEVATLSSVRHNNVVKLYCSISSEDSNLLVYEYLPNGSLWDQLHTSRKIEMGWKIRYEVAVGAARGLEYLHHGCDRPVIHRDVKSSNILLDSDWKPRIADFGLAKILQDGHGVGDSSHVIAGTLGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKQPNEPEFGENKDIVQWAHSRMRDLKGNLKDMVDPSISEAQVEDAVKVLRIALRCTAKIPSTRPSMRMVVHMLEEAEPYNFIDVVVKKECEK 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8746058 8749433 - ClCG02G007400.1 Cla02g00724 266850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00724 984 Pfam Leucine rich repeat N-terminal domain 34 77 IPR013210 -
Cla02g00724 984 SMART LRR_typ_2 250 274 IPR003591 -
Cla02g00724 984 SMART LRR_typ_2 489 513 IPR003591 -
Cla02g00724 984 SMART LRR_typ_2 202 226 IPR003591 -
Cla02g00724 984 SMART LRR_typ_2 537 561 IPR003591 -
Cla02g00724 984 SMART LRR_typ_2 297 320 IPR003591 -
Cla02g00724 984 PANTHER RECEPTOR-LIKE PROTEIN KINASE HAIKU2 20 976 - -
Cla02g00724 984 SUPERFAMILY Protein kinase-like (PK-like) 656 966 IPR011009 -
Cla02g00724 984 ProSitePatterns Protein kinases ATP-binding region signature. 683 705 IPR017441 GO:0005524
Cla02g00724 984 Gene3D Ribonuclease Inhibitor 35 191 IPR032675 -
Cla02g00724 984 Gene3D Ribonuclease Inhibitor 192 346 IPR032675 -
Cla02g00724 984 SUPERFAMILY RNI-like 338 635 - -
Cla02g00724 984 Gene3D Phosphorylase Kinase; domain 1 661 769 - -
Cla02g00724 984 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 20 976 - -
Cla02g00724 984 SUPERFAMILY L domain-like 194 433 - -
Cla02g00724 984 Pfam Protein kinase domain 680 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00724 984 Pfam Leucine rich repeat 515 573 IPR001611 GO:0005515
Cla02g00724 984 SUPERFAMILY L domain-like 52 205 - -
Cla02g00724 984 ProSiteProfiles Protein kinase domain profile. 677 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00724 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672|GO:0006468
Cla02g00724 984 SMART serkin_6 677 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00724 984 Gene3D Ribonuclease Inhibitor 349 615 IPR032675 -
Cla02g00724 984 Gene3D Transferase(Phosphotransferase) domain 1 770 978 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00724 Cla-Chr2:8746058 Cla08g00874 Cla-Chr8:21166480 0 dispersed
Cla09g01208 Cla-Chr9:15045486 Cla02g00724 Cla-Chr2:8746058 4.88E-29 dispersed
Cla02g00724 Cla-Chr2:8746058 Cla11g01456 Cla-Chr11:28223851 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80336 PF00069 Pkinase 6.10E-45 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00724 - - csv:101210252 1645.94