Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00729 ATGGACAAATCATCTATGGTGGTTTTTTCTGAGATGGGAATGGAGGATAATGGGTTTGTCAATCAGTGGCACAAGAGCTCAATGGATGAGCTTGGTATGCTCCCATTAGCAGCTACTTTTGGGGAGAATTTGCAGCATTCTTATGCTCAAACAAATATCGACCAGAAGGCTTCTTTAAACCATTCTCACAATGCCATACTTGGGTATGTGAAACAGCTCAAAAGCGATGGGTGGAGTTCATACCAGACAACTAATCATTTGCCAAACTCGCAAGTTATTGCGTATCCGACCGCATCTGTTTCAGCTTCCAACTACACAAACCAAATGGACTTCACGAGGCCAAAAGAGGAAGTTGTGTGTCCTCAGAGTATTAGCAACCTCCCTTCTGATATGTTGGTTTCTCAGGGCTCATTAGCCTACCAAAGCCATGTAACCAAGTCGAATCGTGGAACAAGAAGTCCCTCTACGAACAGTAGAATCCCCCAGGCTCAAGATCACATTCTTGCAGAGCGGAGACGGCGAGAGAAGCTCAGTCAGCGGTTTATCGCTTTATCTGCTATAGTTCCTGGCCTAAAGAAGATGGACAAGGCTTCGGTTCTTGGAGATGCCATTAAGTACCTGAAACAACTCCAAGAGAAAGTGAAGATACTTGAGGAACAAACCCGGAGGAAAGACATCGAATCTGTTGTATTCGTCAAGAAATCCCAAGTTTTTGCTGATGGAAACAACACATCAAAAGAGGAGGATGAGCCCCTTCCCGAGATTGAAGCAAGATTTTGTGACAAAAATGTCCTTATAAGAATACACTGTGAGAAAAAGAAAGATGTCTTAGAGAAAACAATTACTGAAATTGAAAAGTTGCACCTTACAATAGTCAACAGCAGTGTTATGTCATTTGGGAGTCTTGCTCTCGACATAACTATTATTGCGCAGATGGATAATGAATTCTGTCTGACGTTAAAGGACCTCGTGAAGAAGTTACAGTCGACTTTGCGCTCGTTTTAA 1005 42.69 MDKSSMVVFSEMGMEDNGFVNQWHKSSMDELGMLPLAATFGENLQHSYAQTNIDQKASLNHSHNAILGYVKQLKSDGWSSYQTTNHLPNSQVIAYPTASVSASNYTNQMDFTRPKEEVVCPQSISNLPSDMLVSQGSLAYQSHVTKSNRGTRSPSTNSRIPQAQDHILAERRRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQTRRKDIESVVFVKKSQVFADGNNTSKEEDEPLPEIEARFCDKNVLIRIHCEKKKDVLEKTITEIEKLHLTIVNSSVMSFGSLALDITIIAQMDNEFCLTLKDLVKKLQSTLRSF 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8874435 8876309 + ClCG02G007480.1 Cla02g00729 266855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00729 334 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 4 334 - -
Cla02g00729 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Cla02g00729 334 MobiDBLite consensus disorder prediction 144 165 - -
Cla02g00729 334 Pfam Helix-loop-helix DNA-binding domain 164 211 IPR011598 GO:0046983
Cla02g00729 334 Gene3D - 160 233 IPR036638 GO:0046983
Cla02g00729 334 PANTHER BHLH TRANSCRIPTION FACTOR 4 334 - -
Cla02g00729 334 MobiDBLite consensus disorder prediction 144 163 - -
Cla02g00729 334 CDD bHLH_AtNAI1_like 163 235 - -
Cla02g00729 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 223 IPR036638 GO:0046983
Cla02g00729 334 SMART finulus 167 216 IPR011598 GO:0046983
Cla02g00729 334 Coils Coil 200 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01764 Cla-Chr1:32553055 Cla02g00729 Cla-Chr2:8874435 2.50E-57 dispersed
Cla01g01765 Cla-Chr1:32575055 Cla02g00729 Cla-Chr2:8874435 1.77E-54 dispersed
Cla02g00729 Cla-Chr2:8874435 Cla05g00088 Cla-Chr5:854614 1.35E-18 dispersed
Cla02g00729 Cla-Chr2:8874435 Cla10g00159 Cla-Chr10:1703280 5.36E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60620 PF00010 HLH 2.40E-10 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00729 - - csv:101209844 593.964