Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00732 ATGGCTTCGTCTGAGATCGAGGTCGTAGCATCACCCAACTCAAAATCTCAGACAAACCCTGAAGTTGCCATCATGGACGTCTACTCTGCTTCTGCTTATGGAGATCTCCAGAAAGTGAGGAGTTTTGTTGAAGAGCATGGAGCTTCTCTTTCGGTTCCTGATTCCAACGGGTACTATGCCCTGCAATGGGCTGCTCTAAACAACTTCCCCGATATCGTCCAGTACATCATTGAGCATGGAGCAGATGTCAATTCCTGCGACAAATTGCAGCAGACAGCACTTCACTGGGCAGCAGTTCGGGGTTCAATTATGGCTGCAGACATCCTCCTGCTGAATGGAGCTCGAGTGGAGGCAGCTGATATACATGGGTATCGGGTAGCTCATATTGCTGCTCAATATGGACAAACTGCATTCTTGAATCACATTGTTGCCAAATTCCATGCTGACTTTGACGTTCCAGATAATGAAGGGAGGAGTCCTCTTCATTGGGCTGCATACAAAGGTTTTGCCGATACAATTAGACTTCTTTTATTCAGAGATGCAAGCCAAGAAAGACAAGATAAAGAAGGTTGTACCCCTTTGCATTGGGCTGCAATAGGAGGAAATGTGGAGGCATGCACTGTTCTTGTGCATGCAGGAAGGAAGAAAGAATTGTTGATCAAAGACAATGCTGGTTATACACCTTTTCAACTGGCAACTGATAAAGGTCATCGGCAAATTGCTCATATCCTCTCTAAAGCACAACGGACGCATCGCAGCCACTTGGGAGCAAAATTTTGTACTTGGAAGATTGAAAGTTTTGGTTATGCCCCTATTTTACTGTGTGCCATCATTATTCTGGTGATCTTCTTCATCAATTCAGTTCTTGCAGGCTCTAATCTTCCGAAGGTTACTGCTGTTATTGGACTTTGGGCGTGGACTGCCCTCTTTTTGGCATTTGTTTCTCTGATAATGTTTTATAGGTGTAGTAGGATTTTGTTTTCATTTAATACCAAACTTAAGAAATCTCATGTGCAAAGATCCGGGCTATATAAAAAGACCGGGAGAGTTGGGCAATCCTACCAATACAGAGAAGCCAATGATGTATCCAAAAGATTGGTGGGGTCTCCTCCCATGTTAGGTGAAAAGGACTTTGTAGGAAAGGGACCATTGGGATTAAGAGGTCATCTCCATGAATCATCCAAAAGCGAGACAGCAATTGGGACTAAGTCCATGCTGAGTGTGAAAGTCTATAAAGGTGGGGGCAATGAGTGGCTAATGGAGGCGTTGCTACCCACTGTTCAGCCCAGAAAAGAGTGGAAGTGCTGTCTCCAACAAGGTGATGATCCTTTGTTGAGCATTGATCTCAATAGTTCTTCAGTATGGGTGGGGAATTGGTCTCAACTATGCCCCACATGCAAGATAATTAGACCTGTTCGTTCGAAGCACTGTCCTACTTGTAATCGATGTGTGGAACAGTTTGACCACCACTGCCCATGGATATCTAATTGTGTGGGGAAGAGGAATAAACGGGATTTTTTTGTTTTCATCTGCTTGGGAACTTTGACATCATTCCTTTCTGGCTATATTTCCATACTAAGAATCTACACTGTGCCTTCAGCATTGCCAACTGGAGAAACTTGGTTTCATCATGTGGTAGTTCATTATCCTGGAGTCGTTACATTTCTTTTTCTGGATGCTGTTATATTTATTGCTGCCACAACTTTGACTGTAGCTCAGGCATCTCAGATAGCACGAAATATCACCACGAACGAACTGTCAAATGCCATTCGCTATGGATATCTTCGTGGTCCAGATGGGAAATTTCGGAATCCATATAATCATGGATGTCGAAAGAATTGCTCTGATTTCCTCATTCAAGGCTATACAGACGACGAGATTGCTTGGCCTCCATTACAGCGTGCTGCCAGTTAA 1914 43.83 MASSEIEVVASPNSKSQTNPEVAIMDVYSASAYGDLQKVRSFVEEHGASLSVPDSNGYYALQWAALNNFPDIVQYIIEHGADVNSCDKLQQTALHWAAVRGSIMAADILLLNGARVEAADIHGYRVAHIAAQYGQTAFLNHIVAKFHADFDVPDNEGRSPLHWAAYKGFADTIRLLLFRDASQERQDKEGCTPLHWAAIGGNVEACTVLVHAGRKKELLIKDNAGYTPFQLATDKGHRQIAHILSKAQRTHRSHLGAKFCTWKIESFGYAPILLCAIIILVIFFINSVLAGSNLPKVTAVIGLWAWTALFLAFVSLIMFYRCSRILFSFNTKLKKSHVQRSGLYKKTGRVGQSYQYREANDVSKRLVGSPPMLGEKDFVGKGPLGLRGHLHESSKSETAIGTKSMLSVKVYKGGGNEWLMEALLPTVQPRKEWKCCLQQGDDPLLSIDLNSSSVWVGNWSQLCPTCKIIRPVRSKHCPTCNRCVEQFDHHCPWISNCVGKRNKRDFFVFICLGTLTSFLSGYISILRIYTVPSALPTGETWFHHVVVHYPGVVTFLFLDAVIFIAATTLTVAQASQIARNITTNELSNAIRYGYLRGPDGKFRNPYNHGCRKNCSDFLIQGYTDDEIAWPPLQRAAS 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8918489 8928547 - ClCG02G007560.2 Cla02g00732 266858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00732 637 Gene3D - 5 141 IPR036770 -
Cla02g00732 637 ProSiteProfiles Ankyrin repeat profile. 189 213 IPR002110 GO:0005515
Cla02g00732 637 ProSiteProfiles Ankyrin repeat profile. 56 88 IPR002110 GO:0005515
Cla02g00732 637 ProSiteProfiles Ankyrin repeat profile. 156 188 IPR002110 GO:0005515
Cla02g00732 637 ProSiteProfiles Ankyrin repeat region circular profile. 156 188 - -
Cla02g00732 637 PANTHER - 3 324 - -
Cla02g00732 637 PANTHER - 438 625 - -
Cla02g00732 637 ProSiteProfiles Ankyrin repeat region circular profile. 89 120 - -
Cla02g00732 637 SMART ANK_2a 56 85 IPR002110 GO:0005515
Cla02g00732 637 SMART ANK_2a 224 253 IPR002110 GO:0005515
Cla02g00732 637 SMART ANK_2a 156 185 IPR002110 GO:0005515
Cla02g00732 637 SMART ANK_2a 122 152 IPR002110 GO:0005515
Cla02g00732 637 SMART ANK_2a 189 218 IPR002110 GO:0005515
Cla02g00732 637 SMART ANK_2a 89 118 IPR002110 GO:0005515
Cla02g00732 637 ProSiteProfiles Ankyrin repeat region circular profile. 56 88 - -
Cla02g00732 637 Gene3D - 142 253 IPR036770 -
Cla02g00732 637 ProSiteProfiles DHHC domain profile. 461 511 - -
Cla02g00732 637 PANTHER PROTEIN S-ACYLTRANSFERASE 24 3 324 - -
Cla02g00732 637 PANTHER PROTEIN S-ACYLTRANSFERASE 24 438 625 - -
Cla02g00732 637 Pfam DHHC palmitoyltransferase 461 587 IPR001594 GO:0016409
Cla02g00732 637 ProSiteProfiles Ankyrin repeat profile. 89 121 IPR002110 GO:0005515
Cla02g00732 637 SUPERFAMILY Ankyrin repeat 28 246 IPR036770 -
Cla02g00732 637 Pfam Ankyrin repeats (3 copies) 128 213 IPR002110 GO:0005515
Cla02g00732 637 Pfam Ankyrin repeats (3 copies) 30 119 IPR002110 GO:0005515
Cla02g00732 637 ProSiteProfiles Ankyrin repeat region circular profile. 189 213 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00732 K20032 ZDHHC13_17, HIP14; palmitoyltransferase ZDHHC13/17 [EC:2.3.1.225] - csv:101206919 611.298
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00732 Cla-Chr2:8918489 Cla11g00318 Cla-Chr11:3636166 1.68E-56 dispersed
Cla02g01974 Cla-Chr2:34805004 Cla02g00732 Cla-Chr2:8918489 6.99E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g828 . . . . . . . . Cmo19g00523 . . . . . . . Cpe15g00405 Bhi05g00980 Tan02g1093 . Lac12g0121 . . . Cla02g00732 Cam02g0777 Cec02g0776 Cco02g0805 Clacu02g0772 Cmu02g0765 Cre02g1079 Cone12ag1016 Cone8ag1045 . . Lsi03g00647 . . . . . . . . . . . . . . . Cma19g00510 . Car19g00384 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006934 1 4 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00732 Cla_Chr02 FPKM 0.0 0.17561 0.696516 0.656099 0.0 0.0 0.0 0.133682 0.131853 0.106705