Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00739 ATGGACACTCTCTTTGTCCCCATATCCTTCTCCGAACCTCCTCGTCCTTCACTCACCCGCAACACCAACGCCGGTGCTCAATCGAGGATTGGACCTGTTTCCCGCTTCTCGCCGCGTTCTTCTCTAATTCGGCTCAAGCCCTTTCCCATTCCCTGTAAGAAGCTTTCCTCTCCTCGCTTCGGTCACTTCCGTTGCGCCGCCGACGCCTCCAGTCACCCACACGGTCACCATCACGGCCATCATCACCACCACCATGGCTGCCAGCACCATTGCAGTCGTGACGGTAATGGAGTGGAGCTGACTGGGGCTCAGAAGGCGTTTGTTCGATTTGCCGAAGCTATTAGGTGGACGGACTTGGCGAATTTTTTGAGGGAGCATCTACATTTGTGTTGCGGTTCTGCTGCTTTGTTTGTGACTGCAGCTGCGTGCCCTTATTTGGTGCCAAAACCTGCTGTGAAGCCTCTACAGAATGTTTTCATTGCAGTTGCTTTCCCTTTAGTCGGGGTCTCTGCTTCTCTTGATGCTCTTACTGATATTAGTGGTGGGAAAGTAAACATCCATGTACTAATGGCTCTTGCTGCCTTTGCATCAATTTTTATGGGGAACCCCTTGGAAGGAGGACTACTTCTTGTGATGTTTAATATGGCTCATATTGCTGAAGAGTATTTCACAAAGCAATCAATGATTGATGTTAAAGAGTTGAAGGAAAGTCATCCAGATTTTGCTCTTGTTCTTGATGTGAATGATGATAACCTTCCCGATACTTCAGATCTGGAGCATAGAAGGGTGCCAGTGCGTGATGTTGAAGTGGGCTCATATATCTTGGTGGGAGCTGGTGAGTCTGTCCCTGTAGATTGTGAAGTTTATCAAGGCTGTGCTACGATCACTGTTGAGCACTTGACAGGAGAAGTTAAACCATTGCAAATTAAGGTTGGGGAAAGAGTTCCAGGTGGAGCAAGAAATCTGGACGGTAGGATCATAGTGAAGGCTACAAAAACATGGGAAGAGTCAACACTTAGCAGGATTGTGCAGTTGACTGAAGAAGCACAACTTAATAAACCAAAGCTACAGAGGTGGCTCGATGAATTTGGTGAGAATTACAGCAAGGTTGTTGTAGTCTTATCCGTAGCGGTTGCACTCATTGGACCATTATTGTTCAAGTGGCCATTTATATGCACACCAGGTTTCAGAGGATCGGTTTATAGAGCACTTGGACTCATGGTAGCCGCATCACCATGTGCACTGGCAGCAGCACCTTTGGCATATGCTATCGCAATAAGTTCCTGTGCAAGAAAGGGGATACTCCTGAAAGGTGGACACGTCCTTGATGCTATGGCTTCTTGTCACACTGTTGCATTTGATAAAACGGGAACATTGACTACAGGAGGACTTGTGTTTAAAGCCATAGAACCCATTTATGGGCATAAGATTGGAGGGGATAAATCACATTTTGCTTCCTGTTGCATACCGAGCTGCGAAAAAGAAGCCCTTGCTGTGGCAGCTGCCATGGAAAAGGGTACTACTCACCCAATTGGAAGAGCTGTAGTAGATCATAGTGTGGGGAAAGACCTTCCTTCTATTTCTGTTGAAAGTTTTGAATATTTCCCTGGAAGAGGTCTCATTGCAACTCTGCATGGCATTAAGTCAGGAATTGGAGGTAAATTGCGGAAAGCATCTCTTGGTTCTGTGGATTTCATCACTTCCTTCTGCAAATCCGAAAATGAATCAAGGAAGATCAAGGATGCAGTTAGAGCATCATCATATGGAAGTGAATTTGTTCATGCTGCTCTTTCAGTTGATCAAAAGGTAACACTAATTCACCTTGAGGATCAACCACGACCTGGAGTCTTAGATGCCATAGCAGAACTACAAGATCAGGGAAAACTCCGAGTTATGATGCTAACAGGTGATCATGATTCAAGTGCATGGAAAGTTGCGAATGCTGTAGGCATAAATGAAGTGTACTACAGTCTTAAGCCAGAGGACAAACTTGCTCACGTGAAGGAAATTTCAAGGGAGATGGGGGGTGGTCTGATCATGGTAGGCGAAGGTATAAACGATGCACCTGCACTTGCTGCTGCTACTGTGGGAATAGTTCTTGCCCACCGTGCAAGCGCTACTGCTACAGCTGTTGCAGACGTCCTGCTTCTTCAGGACAGTATTTCCGGCATTCCATTCTGCATTGCCAAATCTCGTCAGACCACTTCACTGGTCAAGCAAAATGTGACCCTTGCCTTGTCATCTATCCTTCTAGCCTCTCTCCCATCCGTTTTGGGGTTTCTTCCCTTGTGGCTAACGGTCCTTCTACATGAGGGTGGCACTCTCCTGGTTTGCTTGAACTCCGTACGTGCTCTAAATCAGCCCTCGTGGTCGTGGAAACAAGATTTTCAAAATCTGATACATGACGTCAGATCTAAACTCAATACGACACCCGAAACTAGCTCTGGACCATCCAAACTGCAACTTCATAGCATAAACTTCTCTCTCCTAGGTAAGCCATAA 2502 46.36 MDTLFVPISFSEPPRPSLTRNTNAGAQSRIGPVSRFSPRSSLIRLKPFPIPCKKLSSPRFGHFRCAADASSHPHGHHHGHHHHHHGCQHHCSRDGNGVELTGAQKAFVRFAEAIRWTDLANFLREHLHLCCGSAALFVTAAACPYLVPKPAVKPLQNVFIAVAFPLVGVSASLDALTDISGGKVNIHVLMALAAFASIFMGNPLEGGLLLVMFNMAHIAEEYFTKQSMIDVKELKESHPDFALVLDVNDDNLPDTSDLEHRRVPVRDVEVGSYILVGAGESVPVDCEVYQGCATITVEHLTGEVKPLQIKVGERVPGGARNLDGRIIVKATKTWEESTLSRIVQLTEEAQLNKPKLQRWLDEFGENYSKVVVVLSVAVALIGPLLFKWPFICTPGFRGSVYRALGLMVAASPCALAAAPLAYAIAISSCARKGILLKGGHVLDAMASCHTVAFDKTGTLTTGGLVFKAIEPIYGHKIGGDKSHFASCCIPSCEKEALAVAAAMEKGTTHPIGRAVVDHSVGKDLPSISVESFEYFPGRGLIATLHGIKSGIGGKLRKASLGSVDFITSFCKSENESRKIKDAVRASSYGSEFVHAALSVDQKVTLIHLEDQPRPGVLDAIAELQDQGKLRVMMLTGDHDSSAWKVANAVGINEVYYSLKPEDKLAHVKEISREMGGGLIMVGEGINDAPALAAATVGIVLAHRASATATAVADVLLLQDSISGIPFCIAKSRQTTSLVKQNVTLALSSILLASLPSVLGFLPLWLTVLLHEGGTLLVCLNSVRALNQPSWSWKQDFQNLIHDVRSKLNTTPETSSGPSKLQLHSINFSLLGKP 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8979134 8988410 + ClCG02G007610.1 Cla02g00739 266865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00739 833 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 186 783 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cla02g00739 833 Pfam E1-E2 ATPase 259 432 - -
Cla02g00739 833 MobiDBLite consensus disorder prediction 14 31 - -
Cla02g00739 833 MobiDBLite consensus disorder prediction 11 31 - -
Cla02g00739 833 Gene3D - 445 732 IPR023214 -
Cla02g00739 833 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Cla02g00739 833 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Cla02g00739 833 PRINTS P-type cation-transporting ATPase superfamily signature 604 615 - -
Cla02g00739 833 PRINTS P-type cation-transporting ATPase superfamily signature 627 637 - -
Cla02g00739 833 PRINTS P-type cation-transporting ATPase superfamily signature 681 700 - -
Cla02g00739 833 PRINTS P-type cation-transporting ATPase superfamily signature 705 717 - -
Cla02g00739 833 SFLD p-type atpase 434 734 IPR044492 -
Cla02g00739 833 Gene3D - 463 612 IPR023299 GO:0000166
Cla02g00739 833 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 585 761 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla02g00739 833 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 261 473 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla02g00739 833 SFLD C1.7: P-type atpase like 434 734 - -
Cla02g00739 833 Pfam haloacid dehalogenase-like hydrolase 450 694 - -
Cla02g00739 833 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 53 808 - -
Cla02g00739 833 SUPERFAMILY Calcium ATPase, transmembrane domain M 188 764 IPR023298 -
Cla02g00739 833 CDD P-type_ATPase_HM 128 783 - -
Cla02g00739 833 SUPERFAMILY Calcium ATPase, transduction domain A 260 345 IPR008250 -
Cla02g00739 833 SUPERFAMILY HAD-like 450 781 IPR036412 -
Cla02g00739 833 Gene3D - 225 350 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00739 Cla-Chr2:8979134 Cla02g00794 Cla-Chr2:10286516 0 dispersed
Cla02g00739 Cla-Chr2:8979134 Cla11g01161 Cla-Chr11:24336026 1.05E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00739 K01534 - csv:101221102 1453.73