Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00794 ATGGGAACCCTTTCCTTCCCAATTGCGTCCTCAAAATCCCGACTCTTATCGACTCCGAATCCAATTGCTTTTTCTATCCGTTTTCTTCAAACATCTTTCCCTTCTTCTGCAATTCGCCTTCGTAATTCTCCCATTCTCCATCTACGGCGACGTCTTCTCTGTTCTGCTGCAGAAACTGGTCGTTCGAATCACGATGACCACCACCATGTTCATGATCACCAGCACCACCAGCACCAGCAGCACCACCACCACCATGGTCATCACCATTGTGATCATGATGTGGAGCTGTCTGGGCCTCAGAAAGCGGTGATTGGATTTGCTAAAGCCATTAGGTGGACAGACTTGGCTAGCTATCTCCGGGAACACCTGCAATTATGTTGCTGCTCTATGGCTTTGTTTGTAGCTGCTGCTGTTTCCCCATATTTGGTGCCGAAGCTCATTGCAAAGCCTTTGCAAAATGCTTTCATTGTCATTGCTTTTCCTTTAGTCGGGGTCTCCTCATCCCTTGATGCTTTAACTGATATTAGTGGTGGAAAAGTAAACATCCATACACTTATGGCTCTTGCAGCCTTTGCTTCCATCTTTATGGGGAACGCCTTGGAAGGAGGACTACTACTTGCCATGTTTAATTTGTCTCACATTGCGGAAGAGTATTTTACAAGTCGTGCAATGATTGATGTCAAAGACTTGAAGGAAAACTATCCAGACTCTGCCCTTGTTTTAGATACAAATGATGGTAAACTTCCAAATATTACAGATTTATCCTACCAAAAGGTGCCTGTCCATGATATAGAGGTGGACTCCTATATATTGGTTGGAGCTGGTGAGTTTGTGCCTATAGATTGTGAAGTTTTCCAAGGTAGTGCTACAGTCACCATTGAGCACCTAACCGGTGAAATCAAACCATTGGAGATTACGGTTGGAAGCAGAGTTCCTGGTGGTGCAAGAAACTTGGATGGTAGGATAATCGTGAAGGCAACAAAGACCTGGAAAGAGTCAACTTTGAGTCGTATAGTGAACTTGACTGAAGAAGCACAACTGAATAAACCAAGACTTCAGAGGTGGCTTGATGAATTTGGTGAGCATTATAGCAAAGCAGTTGTAGTATTGGCCATTGCTATTGCCCTCGTTGGTCCAATATTATTCAAGTGGCCATTTATTGGTACATCAGCTTGTAGAGGATCGGTTTACAGAGCTCTAGGCCTCATGGTGGCAGCATCACCTTGTGCTTTGGCAGTTGCACCATTGGCTTATGCTATTGCAATTAGTTCCTGTGCAAGAAAGGGGATATTGTTGAAAGGTGGGCGTGTATTAGATGCTTTAGCTTCTTGTCACACTATAGCTTTTGATAAAACTGGGACGTTGACTACTGGGGGGCTCATTTTCAAAGCGATTGAACCAATTTACGGACATGAGGTTGGAGAAAACAAATCAGACTTTGGTTCCTGTTGCATTCCCTGCTGTGAAGAAGAAGCTCTTGCTGTAGCAGCTGCCATGGAGAAGGGTACTACTCACCCCATTGGAAGGCCTGATGGGCTCAAGGACATGATGTGTGTGGCCCAACCTGTGGAAGATAGTATGGAAGTTGCCAAGCTGCCCAAGAAGACAGGTCAAGTAAGGAAACCAAACAGGAACCCAAAGAACTTGGTTCTGAGGGAAGAGGAGACCAGTGCACTAGCTGTTGTCGACCATAGTATGGGAAAAGACCTCCCATCCTTTTCTGTCCAGAATTTGGAATATTTTCCGGGTAGAGGACTTGTTGCAACTCTGCATGGTACTGAGTCGGGAACTGAAGGTGGGAAACTATTGAAAGCATCTCTTGGGTCCTTAGATTTCATCACTTCATGCTACAAATCAGAAACCAAATCAAAAGAGATCAAAGAAGCTGCGAGCACATCTTCATATGGAAGTGAGTTTGTTCATGCTGCTCTTGCAGTTGATGGGAAGGTAACACTTATTCATCTTGAGGATCGACCTCATCCTGGAGTTTCAAGTGTAATAGCTGAATTAACAGATAGGGCTAAACTCCATGTAATGATGTTGACTGGAGATCATGAGTCAAGTGCACGGAGAGTGGCAAACGCAGTGGGCATCAAGGAAGTCCACTTCAGTCTAAAGCCTGAAGACAAGCTTAGTCACGTCAAAAGTATCTCTAGGGAGAATGGAGGAGGACTAATTATGGTTGGTGAAGGCATTAATGATGCACCAGCCCTTGCTGCTGCTACCGTAGGCATAGTGCTTGCTCAACGTGCTAGTGCAACGGCTATAGCTGTGGCTGATGTTCTGTTGCTGCGGGATAACATATCTGGTGTACCATTCTGTATTGCCAAGTCTCGCCAGACGACTGCCCTAGTTAAACAGAATGCTAGTCTTGCTTTGTTTTCAATATTTGTGGCCTCTCTTCCTGCAGTTCTAGGGTTTCTTCCATTGTGGTTAACGGTACTTCTGCACGAAGGTGGTACTCTTCTCGTTTGCCTCAATTCCATACGTGCTCTGAATAATCCTAGTTGGTCCTGGAAGCAGGACTTGAAGCAATTGCTAATGGAGCTGAAATTTAAAGACTCGCAGCCTAGCCATAATGCCAGCTCTACTACTCTACAATCTTCCCCTGTATAG 2616 44.99 MGTLSFPIASSKSRLLSTPNPIAFSIRFLQTSFPSSAIRLRNSPILHLRRRLLCSAAETGRSNHDDHHHVHDHQHHQHQQHHHHHGHHHCDHDVELSGPQKAVIGFAKAIRWTDLASYLREHLQLCCCSMALFVAAAVSPYLVPKLIAKPLQNAFIVIAFPLVGVSSSLDALTDISGGKVNIHTLMALAAFASIFMGNALEGGLLLAMFNLSHIAEEYFTSRAMIDVKDLKENYPDSALVLDTNDGKLPNITDLSYQKVPVHDIEVDSYILVGAGEFVPIDCEVFQGSATVTIEHLTGEIKPLEITVGSRVPGGARNLDGRIIVKATKTWKESTLSRIVNLTEEAQLNKPRLQRWLDEFGEHYSKAVVVLAIAIALVGPILFKWPFIGTSACRGSVYRALGLMVAASPCALAVAPLAYAIAISSCARKGILLKGGRVLDALASCHTIAFDKTGTLTTGGLIFKAIEPIYGHEVGENKSDFGSCCIPCCEEEALAVAAAMEKGTTHPIGRPDGLKDMMCVAQPVEDSMEVAKLPKKTGQVRKPNRNPKNLVLREEETSALAVVDHSMGKDLPSFSVQNLEYFPGRGLVATLHGTESGTEGGKLLKASLGSLDFITSCYKSETKSKEIKEAASTSSYGSEFVHAALAVDGKVTLIHLEDRPHPGVSSVIAELTDRAKLHVMMLTGDHESSARRVANAVGIKEVHFSLKPEDKLSHVKSISRENGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRDNISGVPFCIAKSRQTTALVKQNASLALFSIFVASLPAVLGFLPLWLTVLLHEGGTLLVCLNSIRALNNPSWSWKQDLKQLLMELKFKDSQPSHNASSTTLQSSPV 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10286516 10314685 - ClCG02G008150.1 Cla02g00794 266920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00794 871 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 182 830 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cla02g00794 871 PRINTS P-type cation-transporting ATPase superfamily signature 728 747 - -
Cla02g00794 871 PRINTS P-type cation-transporting ATPase superfamily signature 752 764 - -
Cla02g00794 871 PRINTS P-type cation-transporting ATPase superfamily signature 674 684 - -
Cla02g00794 871 PRINTS P-type cation-transporting ATPase superfamily signature 448 462 - -
Cla02g00794 871 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 255 471 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla02g00794 871 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 634 808 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla02g00794 871 MobiDBLite consensus disorder prediction 73 88 - -
Cla02g00794 871 Gene3D - 660 779 IPR023214 -
Cla02g00794 871 Gene3D - 441 458 IPR023214 -
Cla02g00794 871 SFLD p-type atpase 430 781 IPR044492 -
Cla02g00794 871 Gene3D - 552 659 IPR023299 GO:0000166
Cla02g00794 871 Gene3D - 459 509 IPR023299 GO:0000166
Cla02g00794 871 SUPERFAMILY Calcium ATPase, transmembrane domain M 185 812 IPR023298 -
Cla02g00794 871 MobiDBLite consensus disorder prediction 60 92 - -
Cla02g00794 871 Pfam E1-E2 ATPase 252 428 - -
Cla02g00794 871 ProSitePatterns E1-E2 ATPases phosphorylation site. 450 456 IPR018303 -
Cla02g00794 871 SUPERFAMILY HAD-like 446 828 IPR036412 -
Cla02g00794 871 SFLD C1.7: P-type atpase like 430 781 - -
Cla02g00794 871 SUPERFAMILY Calcium ATPase, transduction domain A 252 341 IPR008250 -
Cla02g00794 871 Gene3D - 220 346 - -
Cla02g00794 871 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 558 858 - -
Cla02g00794 871 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 41 509 - -
Cla02g00794 871 Pfam haloacid dehalogenase-like hydrolase 567 741 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00739 Cla-Chr2:8979134 Cla02g00794 Cla-Chr2:10286516 0 dispersed
Cla02g00794 Cla-Chr2:10286516 Cla05g01629 Cla-Chr5:27669456 1.40E-45 dispersed
Cla02g00794 Cla-Chr2:10286516 Cla06g01348 Cla-Chr6:26954434 3.99E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00794 K01534 - jre:109009121 1134.4