Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00806 ATGCATCCCGATGATCAGCAGCAGCAGCCGTTGATAGAGGAGGAAGAGGAAGAAACTGCTTACGATTTGACGGAGAAGGTTGTGGTAATTGGGATCCACGAACCGGAGTCTGATTCGGACGTGGGTTTGCTGCCGTTTTCATGGAGGAAGCTCTGGCTGTTCACAGGGCCTGGGTTTTTGATGAGCATAGCGTTTCTAGATCCTGGGAATTTGGAGTCCAATCTTCAGGCTGGTGCTATAGCTGGGTATTCTTTGTTGTGGCTTCTGTTGTGGGCTACGGCCATGGGGCTTTTGATCCAGTTGCTTTCGGCTAGGCTTGGCGTTGCCACTGGCAGGCACTTGGCCGAGCTATGTAGAGAAGAGTACCCAACTTGGGCGAGGATTGTGCTGTGGGTCATGGCGGAGTTCGCCCTAATTGGGGCTGATATACAGGAAGTCATTGGGAGTGCTATTGCTATTAAGATTCTGAGTAACGGGGCTTTGCCTCTCTGGGTTGGAGTCATCATCACTGCTTTAGATTGTTTTATCTTCCTGTTTCTTGAGAATTATGGTGTGAGGAAACTGGAGGCTGTTTTTGCTGTTCTCATTGCTACAATGGCAATCTCATTTGCTTGGATGTTTGGTGAAACTAAGCCAGATGGGAAGGAGCTTCTATTGGGTATTTTGATTCCAAAACTTAGCTCCAAGACAATTAAACAGGCTGTTGCTGTTGTGGGGTGTATCATCATGCCTCATAATGTGTTTTTGCATTCTGCTCTTGTGCAGTCGCGTGATATTGATCCGAGTAAGAAAGGGCGGGTCCGGGAAGCTCTAAGATACTACTCCATTGAGTCCACTCTTGCCCTTTTTGTCTCCTTCATCATCAACTTGTTTGTTACAACTGTGTTTGCTAAAGCCTTCTATGGTACAGACATAGCGAATAGCATTGGTCTTGTAAATGCAGGCCAATATCTTCAAGATAAATATGGTGGAGGGCTTTTCCCCATTTTGTACATCTGGGCTATTGGTTTATTAGCTGCTGGCCAAAGTAGCACCATCACTGGTACCTATGCAGGACAGTTTATCATGAGTGGATTCCTGAACTTGAAGTTGAAAAAATGGCTAAGAGCTTTGATAACTAGAAGCTTTGCAATCATTCCAACTATGATTGTTGCTCTTGTGTTTGAAACTTCTGACTCGATGGTTGATGTTCTGAATGAATGGCTCAATGTCCTCCAGTCCATTCAGATTCCCTTTGCTCTGATTCCTCTTCTCTGTTTGGCTTCGAAGGAAAATCTAATGGGTAGTTTCAGAATTGGCCCCGTTTTAAAGGTATGTACAATCTCTTGGCTGGTGGCAGTCTTGGTAATGGCCATCAACGGGTACCTTTTGGTGAGCTTCTTCTCATCGGAAGTGAACGGAGTGCTCGTTGCCATTTTTGTATTTGTCTTCATCGCTGCATATCTTGCCTTTGTTGTCTACCTCGTCTATCAAAGCATTTCGTTTTCAAGTTGGCACAACTTCATTAATCGGAAGACTTACACGGCCAATGGAAACTGA 1539 45.22 MHPDDQQQQPLIEEEEEETAYDLTEKVVVIGIHEPESDSDVGLLPFSWRKLWLFTGPGFLMSIAFLDPGNLESNLQAGAIAGYSLLWLLLWATAMGLLIQLLSARLGVATGRHLAELCREEYPTWARIVLWVMAEFALIGADIQEVIGSAIAIKILSNGALPLWVGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMAISFAWMFGETKPDGKELLLGILIPKLSSKTIKQAVAVVGCIIMPHNVFLHSALVQSRDIDPSKKGRVREALRYYSIESTLALFVSFIINLFVTTVFAKAFYGTDIANSIGLVNAGQYLQDKYGGGLFPILYIWAIGLLAAGQSSTITGTYAGQFIMSGFLNLKLKKWLRALITRSFAIIPTMIVALVFETSDSMVDVLNEWLNVLQSIQIPFALIPLLCLASKENLMGSFRIGPVLKVCTISWLVAVLVMAINGYLLVSFFSSEVNGVLVAIFVFVFIAAYLAFVVYLVYQSISFSSWHNFINRKTYTANGN 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10614508 10616859 + ClCG02G008270.2 Cla02g00806 266932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00806 512 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 49 427 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla02g00806 512 Pfam Natural resistance-associated macrophage protein 72 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla02g00806 512 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 8 509 - -
Cla02g00806 512 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 8 509 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla02g00806 512 Hamap Divalent metal cation transporter MntH [mntH]. 37 461 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla02g00806 512 PRINTS Natural resistance-associated macrophage protein signature 185 206 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla02g00806 512 PRINTS Natural resistance-associated macrophage protein signature 403 422 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla02g00806 512 PRINTS Natural resistance-associated macrophage protein signature 234 257 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla02g00806 512 PRINTS Natural resistance-associated macrophage protein signature 341 360 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla02g00806 512 PRINTS Natural resistance-associated macrophage protein signature 369 386 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla02g00806 512 PRINTS Natural resistance-associated macrophage protein signature 130 156 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla02g00806 512 PRINTS Natural resistance-associated macrophage protein signature 160 179 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00806 Cla-Chr2:10614508 Cla08g00615 Cla-Chr8:18076250 2.35E-104 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00806 K21398 - csv:101211711 918.687