Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00814 ATGCACCTTTTCTCAAAACCACCAATGGACTACTCTCCACCAAACTGGAACTGGCTCTTCGATTACTATACAATGGATGATCTCCCCGTCGTCGACGCCCACTTCTCGCCGCCGCAGTCCATTAGTTTCTCCTGGTCCAATCCCTCCATCAACTTTTCATCTCAACACAGCCTTGAGGTAGATTGCTCATATGAAGATCTGGACAGCTCAAAGGAAATGGGTCGGAAACGGCTAAGGGGTGAAACAAGTGCTGCATCTACCTCCAAAGCCTGCAGGGAGAAACAGAGGAGAGATAAGCTGAATGAGAGGTATCGTATTATCAATTATGAATTTAGACTTCAATCTCCTTTTACTAATACACCGTCTATAATTTCAAGGTTCTTGGAATTGGCTACTGTCCTGGAACCTGGGAAACCACCCAAAACCGACAAGGTTGCAATCTTGAGTGATGCTATCAGAATGATGTCCGATTTACAATGTGAAACTCAGAAGCTGAGAGAATCGATGGAGGATTTGAAGGCAAAAATCAAAGAACTAAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGGTTGAGAGCAGAGAAAGAAAATTTGGAGCTGCAAATCAAAGCAGTGAATACTCGAGCAGCTGACATCCAGCATCCTCCCCCTACACTGTCAGCTGCATTTACAGCACAAGGGCAAGTGGCTGGTAACAAGTTGATGCCTTTCATTGGTTATCCTGGCATTGCCATGTGGCAGTTCTTGCCGCCTGCAGCCGTCGACATATCACAGGATCACGTGCTCCGTCCACCAGTTGCTTAA 810 45.68 MHLFSKPPMDYSPPNWNWLFDYYTMDDLPVVDAHFSPPQSISFSWSNPSINFSSQHSLEVDCSYEDLDSSKEMGRKRLRGETSAASTSKACREKQRRDKLNERYRIINYEFRLQSPFTNTPSIISRFLELATVLEPGKPPKTDKVAILSDAIRMMSDLQCETQKLRESMEDLKAKIKELKVEKNELRDEKQRLRAEKENLELQIKAVNTRAADIQHPPPTLSAAFTAQGQVAGNKLMPFIGYPGIAMWQFLPPAAVDISQDHVLRPPVA 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10782991 10786142 + ClCG02G008370.2 Cla02g00814 266940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00814 269 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 125 269 - -
Cla02g00814 269 PANTHER BHLH TRANSCRIPTION FACTOR 125 269 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cla02g00814 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 125 183 IPR036638 GO:0046983
Cla02g00814 269 MobiDBLite consensus disorder prediction 73 96 - -
Cla02g00814 269 CDD bZIP 173 205 - -
Cla02g00814 269 Coils Coil 155 210 - -
Cla02g00814 269 Gene3D - 85 184 IPR036638 GO:0046983
Cla02g00814 269 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 12 104 - -
Cla02g00814 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 84 158 IPR011598 GO:0046983
Cla02g00814 269 PANTHER BHLH TRANSCRIPTION FACTOR 12 104 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cla02g00814 269 CDD bHLH_AtILR3_like 89 187 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00814 Cla-Chr2:10782991 Cla10g00537 Cla-Chr10:7161537 1.39E-67 dispersed
Cla02g00814 Cla-Chr2:10782991 Cla05g01539 Cla-Chr5:25681619 1.85E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60624 None None None None Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00814 - - csv:101212433 427.943