Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00833 ATGCCTGCCGGAATTATGACACCGGCCAGAAGCATGGCGTCGATGATTGGAAGAAATGAGAATAATGCTGCTGGATTTGCCTCTCCTTCTGGATTTCCTCTTTCTCAGATCTGTAGAAAAATGTTCCAGTCAAGCATGATGGACAGTCATCTCCTCCCCTTAGACATCCCTCAAAACACTTCCGAAAGCGACCTTGCTCGAATCCGAGACGATGACTTCGACAGTGCCACTAAATCCGGCAGCGACAACAACCCTGACCTTGTCTCCGGTGACGACCAAGATCCTCGTCCTAAAAAGAAGCGCTATCATCGTCATACTCAACATCAGATCCAAGAAATGGAAGCGTTCTTCAAGGAGTGTCCTCACCCTGATGACAAACAAAGAAAGGAATTAAGCAGGGAATTAGGGTTAGAGCCGTTGCAAGTCAAATTTTGGTTCCAAAACAAACGCACTCAAATGAAGAATCAACACGAGCGGCATGAGAACACTCAACTCAGAACAGAAAATGAGAAGCTTAGGGCTGATAACATGAGATACAGAGAAGCTCTTAGCAATGCCTCGTGCCCTAATTGTGGTGGCCCTACTGCCATTGGTGAAATGTCTTTTGATGAACATCATCTTAGACTCGAAAATGCCTGTCTTCGAGAAGAGATCGATCGCATTTCAGCAATAGCTGCAAAATACGTAGGGAAGCCAGTCGTGAACTACCCTCTACTTTCTCCACCAGTTCCAGCTCGCCCACTAGAGCTAGGAATGGGCAACTTCGGACCACAACCAGGCCTCGGAGGAGGAGACCTCTACAGCTCGGCCAGCGACCTGATCCGATCCATCAGCGCCCCAACCGAGGCTGATAAGCCAATGATCATCGAGCTAGCAGTTGCAGCCATGGAAGAGCTGACTAGAATGGCTCAAATGGGGGAGCCATTGTGGATGACTAGCCTTGATGGCTCCACCCATGTGCTCAATGAAGATGAGTACTTGAGAACGTTTCCTAGAGGCATTGGTCCTAAGCCTTCTGGGTTTAAATGTGAAGCCTCTCGTGAATCTGCTGTTGTCATCATGAACCACATTAACCTAGTTGAGATTCTCATGGATGTGAACCAATGGTCGACTTTATTTTCTGGAATTGTGTCTAGAGCTATGACACTTGAAGTATTATCAACCGGAGTTGCTGGAAATTACAATGGAGCTTTGCAAGTGATGACGTCGGAATTTCAAGTTCCATCGCCATTGGTTCCGACCCGGGAAAGCTACTTCGTTAGATATTGTAAGCAACATGGGGATGGGACATGGGCGGTGGTGGATGTTTCGTTGGATGATTTGCGCCCTACCCCCGGAGTTCGATGTAGACGAAGACCTTCCGGTTGTTTGATCCAAGAAATGCCAAATGGTTATTCGAAGGTTACATGGGTTGAGCATGTAGAGGTGGATGATAGAGGAGTTCATAATCTTTACAAGCAACTAGTGAGCTCTGGCCAAGCTTTTGGGGCCAAACGTTGGGTTACAACTTTAGATCGCCAATGTGAACGACTTGCTAGTGCCTTGGCTACTAATATTCCAACTGGGGATGTTGGAGTGATAACGAATCAAGAAGGAAGAAAGAGCATGTTGAAGCTGGCTGAGAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGCGCCTCCACAACTCACACATGGACCACTTTGTCGGGTACGGGTGCAGACGATGTTCGAGTCATGACTCGAAAGAGCATCGACGACCCGGGAAGACCTCCTGGTATTGTCCTCAGTGCTGCAACTTCCTTCTGGCTCCATGTTCCACCCAAGAGAATCTTCGATTTCCTTCGAGATGAAAACTCTCGCAGCGAGTGGGACATTCTTTCCAACGGTGGAGTAGTTCAAGAAATGGCCCACATTGCCAATGGCCGTGACACTGGCAACTGCGTTTCTCTCTTACGAGTAAATAGCGCAAATTCAAGCCAAAGCAACATGCTAATCCTGCAAGAAAGCTGCACGGACCCAACAGCCTCATTTGTGATCTACGCTCCAGTTGACATAGTAGCAATGAACGTCGTCCTGAACGGCGGTGATCCCGACTACGTAGCACTTCTCCCCTCAGGCTTTGCCATTCTCCCCGACGGCGCTGGCGGAGAGGGCGTTTCCGGTGGGTCGTTGCTGACGGTTGCATTTCAAATCCTGGTGGATTCAGTGCCCACGGCAAAACTGTCACTTGGGTCAATTGCAACGGTAAACAATCTGATAGCTTGTACGGTGGAGAGGATAAAAGCGTCATTATCATGTGAGAATGCATAA 2292 48.3 MPAGIMTPARSMASMIGRNENNAAGFASPSGFPLSQICRKMFQSSMMDSHLLPLDIPQNTSESDLARIRDDDFDSATKSGSDNNPDLVSGDDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENACLREEIDRISAIAAKYVGKPVVNYPLLSPPVPARPLELGMGNFGPQPGLGGGDLYSSASDLIRSISAPTEADKPMIIELAVAAMEELTRMAQMGEPLWMTSLDGSTHVLNEDEYLRTFPRGIGPKPSGFKCEASRESAVVIMNHINLVEILMDVNQWSTLFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSEFQVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDDLRPTPGVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGQAFGAKRWVTTLDRQCERLASALATNIPTGDVGVITNQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLHVPPKRIFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDPTASFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGAGGEGVSGGSLLTVAFQILVDSVPTAKLSLGSIATVNNLIACTVERIKASLSCENA 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11320437 11325891 + ClCG02G008560.2 Cla02g00833 266959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00833 763 ProSiteProfiles 'Homeobox' domain profile. 96 156 IPR001356 GO:0003677
Cla02g00833 763 SMART HOX_1 97 160 IPR001356 GO:0003677
Cla02g00833 763 CDD homeodomain 99 157 IPR001356 GO:0003677
Cla02g00833 763 SMART START_1 290 510 IPR002913 GO:0008289
Cla02g00833 763 Pfam START domain 291 510 IPR002913 GO:0008289
Cla02g00833 763 Coils Coil 150 182 - -
Cla02g00833 763 Gene3D - 88 173 - -
Cla02g00833 763 SUPERFAMILY Bet v1-like 529 755 - -
Cla02g00833 763 ProSiteProfiles START domain profile. 281 513 IPR002913 GO:0008289
Cla02g00833 763 SUPERFAMILY Bet v1-like 281 512 - -
Cla02g00833 763 Pfam Homeodomain 99 155 IPR001356 GO:0003677
Cla02g00833 763 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 54 760 - -
Cla02g00833 763 SUPERFAMILY Homeodomain-like 85 156 IPR009057 -
Cla02g00833 763 Gene3D - 340 508 IPR023393 -
Cla02g00833 763 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 54 760 IPR042160 -
Cla02g00833 763 ProSitePatterns 'Homeobox' domain signature. 131 154 IPR017970 GO:0000981|GO:0006355
Cla02g00833 763 CDD START_ArGLABRA2_like 285 509 - -
Cla02g00833 763 MobiDBLite consensus disorder prediction 72 107 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g00180 Cla02g00833 CCT
Cla02g00180 Cla02g00833 ECH
Cla02g00833 Cla02g00180 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00833 Cla-Chr2:11320437 Cla03g00460 Cla-Chr3:5175541 0 dispersed
Cla05g01515 Cla-Chr5:24676418 Cla02g00833 Cla-Chr2:11320437 9.75E-134 dispersed
Cla06g00005 Cla-Chr6:79777 Cla02g00833 Cla-Chr2:11320437 1.93E-120 dispersed
Cla09g00177 Cla-Chr9:1816555 Cla02g00833 Cla-Chr2:11320437 1.82E-167 dispersed
Cla04g01235 Cla-Chr4:27472728 Cla02g00833 Cla-Chr2:11320437 0 transposed
Cla07g00126 Cla-Chr7:1439329 Cla02g00833 Cla-Chr2:11320437 1.17E-17 transposed
Cla09g01099 Cla-Chr9:11839186 Cla02g00833 Cla-Chr2:11320437 0 transposed
Cla01g02157 Cla-Chr1:35717070 Cla02g00833 Cla-Chr2:11320437 0 wgd
Cla02g00180 Cla-Chr2:1839253 Cla02g00833 Cla-Chr2:11320437 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60628 PF01852 START 7.50E-60 CL0209 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00833 K09338 - csv:101214763 1429.85