Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00838 ATGAAGGTGTTTTGGATTAGGAGGAATGGGCATTGGGTCAAAAGCAGAGTGATGTTATTTGCATTATTATTGTTGTTTGGGATGTGGATGCCTTTGGGAGTGATTGGTGTTTCTTCTTCGAATCAAAGGGTGTTGAACATTGGAGTTTTGTTCACTCTTGATTCGGTTATTGGAAGGTCTGCACAGCCTGCAATTTTGGCTGCCCTGGACGACGTCAATGCCGATAACAACATTCTTCCAGGAACAAAGCTGAATTTGATCCTACATGACACCAACTGCAGTGGATTTCTTGGAACTCTGGAAGCCTTGCAGTTGATGGAAGATGAAGTGGTTGTTGTTATTGGGCCGCAATCTTCGGGCATCGCTCATGTCATTTCCCATGTTGTTAATGAACTTCATATACCGCTTCTATCATTTGGAGCTACAGATCCTGCTTTGTCTACACAGCAATACCAGTATTTCGTTCGGACCACACAAAGTGATTACTTCCAAATGAATGCAATTGCTGATATGGTACATTATTTTGGATGGAGAGAGGTCGTTACCATTTTTGTAGACGATGATAATGGCAGGAATGGGATCTCAGCACTGAACGATGCCTTGGCGAAGAAGCAAGCAAAGATCTCTTATAAGGCTGCCTTCCCTCCTGGATCCTCCAATAGCGCAATAAGTGACTTGTTGGTTTCGATAAACCTAATGGAATCTCGGGTTTACATTGTACACGTCAATCCTGACACAGGTCTTTCAATATTTTCAATAGCTAAGAAACTTCAGATGATGGGTAATGGCTATGTCTGGATTGCAACAGATTGGCTTTCTTCTTTTCTTGATTCTTTTGAAACAAATATTCTTGAGGTAATGAATCAATTACAGGGTGTTGTTGCTCTTCGTCACCATACCCCAGATGGTGATTTGAAGAAAAACTTTGTCTCCAAGTGGAGGAATCTAAAATTCAAGAAGGGTCCAAACTTCAACTCGTATGCACTCTATGCATACGACTCTGTTTGGTTAGCAGCCCATGCTCTCGACACATTTATTAAAGAAGGCGGAAATATATCCTTTTCCAACGACCTGAAGTTACGTGGAAACGATGAAAGCATGCTACACTTAAAATCTCTTTGGGTGTTTAACGATGGCAAACAACTTCTACAAACAATTAAGAGAACAAACTTCACTGGTGTAAGTGGGAAAATTCAATTTGGGGATGATAGAAATTTGATTCATCCATCTTATGATATCCTGAACATTGTGGGAACTGGTTCACGTAGAATTGGTTACTGGTCAAATTATTCTGGTCTATCAACTATTGCACCAGAAAACTTGTATACCAAGACTCTTAATGCTTCCCCTAATAACCATCTCTACAGTGTCATATGGCCGGGGGAAGTAACGGCCATTCCTCGAGGATGGGTGTTTCCACACGATGGGAAACCATTACAAATTGTAGTACCTAACCGAGTGAGTTACAAAGCCTTTGTTTCTAAAGACAAGAACCCTCCAGGTGTTAAAGGATATTGTATAGACGTGTTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCTCACATATATATATTATATGGAGATGGAAAGGACACTCCTGAGTACAACAATCTTGTAGCTGAAGTTTCACAGAATAAATACGATGCAGTTGTTGGAGACATTACAATTGTAACAAATAGAACAAAGATTGTAGACTTCACACAACCATTTATGGAGTCAGGACTTGTTGTAGTTACTGTCGTCAAAGAGGAGAAGTCTAGTCCATGGGCTTTTCTCAGGCCATTTACTATTCAAATGTGGGTTATCACTGCAATATTCTTTATTTTTGTTGGAGCAGTTGTTTGGATTCTCGAGCACCGGACTAATGAAGAGTTTCGCGGTCCGCCGAGGCAACAATTAATTACAATATTTTGGTTTAGTTTCTCGACAATGTTTTTTTCTCATAAGGAAAACACTGTAAGCACCCTTGGACGGTTGGTGCTGATAATATGGCTCTTTGTTGTGTTAATTATCAACTCAAGCTACACAGCTAGTTTGACGTCGATCTTAACGGTACAACAACTAACGTCAAAGATTGAAGGGATTGATAGCTTAATCTCTAGCACAGATGCAATTGGAGTTCAAGAAGGGTCATTTGCATTGAATTATCTGATTGATGAATTGAATATAGCAGCATCTAGGATCATTAAACTGAAAAGTCAAGAGGAATATGTCGATGCTCTTAAGCGTGGATCAAGAAATGGTGGGGTCGCTGCCATTGTTGACGAGCTTCCTTATGTTGAGCTTTTTTTGGCTGGTACCAATTGCATATTCAGGACAGTTGGACAAGAGTTCACGAAAAGCGGATGGGGATTTGCATTCCAAAGGGACTCTCCTCTTGCAGTTGATTTGTCAACAACCATTCTTCAACTCTCAGAGAATGGTGATCTTCAAAAGATCCACGACAAATGGCTATCGCGAACTGAGTGTTCGATGAGCCTAAACCAAGTTGACGTAAACAAGCTATCATTGAGTAGCTTTTGGGGATTGTTCCTAATTTGTGGCATTTCCTGCTTTGTTGCTCTTTCAATATTCTTCTTTCGAGTATTATTCCAATACCGAAGATTTACCCCGGAAATCCAGTTTGAAGTCGAGGAAATTGAACCTGTTAGGACGAGACGCCTTAGTCGTACAACCAGCTTCATGCACTTTGTAGATAAAAAAGAAGCAGAAGTTAAAGGCCAGCTTAAAAGAAAAGCTAGTGATAACAAACAAGCTAGCCAGAGCTCAGAGGGCCACCCTAATTCATCTCCTTGA 2802 40.58 MKVFWIRRNGHWVKSRVMLFALLLLFGMWMPLGVIGVSSSNQRVLNIGVLFTLDSVIGRSAQPAILAALDDVNADNNILPGTKLNLILHDTNCSGFLGTLEALQLMEDEVVVVIGPQSSGIAHVISHVVNELHIPLLSFGATDPALSTQQYQYFVRTTQSDYFQMNAIADMVHYFGWREVVTIFVDDDNGRNGISALNDALAKKQAKISYKAAFPPGSSNSAISDLLVSINLMESRVYIVHVNPDTGLSIFSIAKKLQMMGNGYVWIATDWLSSFLDSFETNILEVMNQLQGVVALRHHTPDGDLKKNFVSKWRNLKFKKGPNFNSYALYAYDSVWLAAHALDTFIKEGGNISFSNDLKLRGNDESMLHLKSLWVFNDGKQLLQTIKRTNFTGVSGKIQFGDDRNLIHPSYDILNIVGTGSRRIGYWSNYSGLSTIAPENLYTKTLNASPNNHLYSVIWPGEVTAIPRGWVFPHDGKPLQIVVPNRVSYKAFVSKDKNPPGVKGYCIDVFEAAINLLPYPVPHIYILYGDGKDTPEYNNLVAEVSQNKYDAVVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKEEKSSPWAFLRPFTIQMWVITAIFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDSLISSTDAIGVQEGSFALNYLIDELNIAASRIIKLKSQEEYVDALKRGSRNGGVAAIVDELPYVELFLAGTNCIFRTVGQEFTKSGWGFAFQRDSPLAVDLSTTILQLSENGDLQKIHDKWLSRTECSMSLNQVDVNKLSLSSFWGLFLICGISCFVALSIFFFRVLFQYRRFTPEIQFEVEEIEPVRTRRLSRTTSFMHFVDKKEAEVKGQLKRKASDNKQASQSSEGHPNSSP 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11431775 11437731 - ClCG02G008610.1 Cla02g00838 266964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00838 933 Pfam Ligand-gated ion channel 822 852 IPR001320 GO:0015276|GO:0016020
Cla02g00838 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 118 146 - -
Cla02g00838 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 58 74 - -
Cla02g00838 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 249 272 - -
Cla02g00838 933 SUPERFAMILY Periplasmic binding protein-like I 40 471 IPR028082 -
Cla02g00838 933 MobiDBLite consensus disorder prediction 916 933 - -
Cla02g00838 933 MobiDBLite consensus disorder prediction 907 933 - -
Cla02g00838 933 PIRSF IGluLR_plant 14 932 IPR017103 -
Cla02g00838 933 CDD GluR_Plant 477 820 - -
Cla02g00838 933 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 36 915 - -
Cla02g00838 933 SUPERFAMILY Periplasmic binding protein-like II 455 821 - -
Cla02g00838 933 Gene3D - 64 408 - -
Cla02g00838 933 Gene3D - 718 824 - -
Cla02g00838 933 Pfam Bacterial extracellular solute-binding proteins, family 3 489 821 IPR001638 -
Cla02g00838 933 Pfam Receptor family ligand binding region 62 418 IPR001828 -
Cla02g00838 933 SMART GluR_14 480 822 IPR001320 GO:0015276|GO:0016020
Cla02g00838 933 CDD PBP1_GABAb_receptor_plant 46 434 IPR044440 -
Cla02g00838 933 Gene3D - 589 717 - -
Cla02g00838 933 Gene3D - 474 588 - -
Cla02g00838 933 PANTHER GLUTAMATE RECEPTOR 3.4 36 915 - -
Cla02g00838 933 Gene3D - 160 433 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02042 Cla-Chr1:34928727 Cla02g00838 Cla-Chr2:11431775 0 dispersed
Cla02g00340 Cla-Chr2:3312003 Cla02g00838 Cla-Chr2:11431775 0 dispersed
Cla02g00838 Cla-Chr2:11431775 Cla02g00842 Cla-Chr2:11583480 0 dispersed
Cla02g00838 Cla-Chr2:11431775 Cla02g00841 Cla-Chr2:11497814 0 proximal
Cla02g00183 Cla-Chr2:1867212 Cla02g00838 Cla-Chr2:11431775 2.79E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00838 K05387 - csv:101215485 1649.03