Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00841 ATGATTTATGGAATTGATTATGGGGTTTTACAGTACATTGGGAATGAGGTTTTGTTGGTAAACTACTTGATGAAGTTTGATGTGAGATACCTCAAGAGGAATGGGCATTGGGTCAAAAGCAGAGTGATGTTATTTGCATTATTATTGTTGTTTGGGATGTGGACGCCTTTGGGAGTGATTGGTGTTTCTTCTTCGAATCAAAGGGTGTTGAACATTGGAGTTTTGTTCACTCTTGATTCGGTTATTGGAAGGTCTGCACAGCCTGCAATTTTGGCTGCCCTGGACGACGTCAATGCCGATAACAACATTCTTCCAGGAACAAAGCTGAATTTGATCCTACATGACACCAACTGCAGTGGATTTCTTGGAACTCTGGAAGGACAAAGGGTAACAATTGATTCCATGAACATGTATCTAGCCTTGCAGTTGATGGAAGATGAAGTGGTTGTTGTTATTGGGCCGCAATCTTCGGGCATCGTTCACGTTATTTCTCATGTTGTTAATGAACTTCATATACCGCTTCTATCATTTGGAGCTACAGATCCTGCTTTGTCTGCACAACAATACCAGTATTTCGTTCGGACCACACAAAGTGATTACTTTCAAATGAATGCAATTGCTGATATGGTAGATTATTTTAAATGGAGAGAGGTCGTTGCCATTTTTGTAGATGATGATAATGGCAGGAGTGGGATATCAGCATTGAATGATGCCTTAGTGAAGAAGCGAGCCAAGATCTCTTATAAGGCTGCCTTCCCTCCTGGATCCTCCAATAGCGAAATAAGTGACTTGTTGGCTTCGATAAACTTGATGGAATCTCGGGTTTACATTGTACACGTCAATCCCGACACAGGTTTAGCAATATTTTCAATAGCTAAGAAACTTCAAATGATGGGTAGTGGCTATGTCTGGATCGCAACAGATTGGCTTCCTTCTTTTCTTGATTCTTTTGAAACAAATAGTCCTGATGTAATGAATCAGTTACAAGGTGTTGTTGCTCTTCGTCACCACACCCCTGATGACAATCGAAAGAAAAACTTTGTCTCCAAGTGGAGGAATCTAAAATACAAGAAGAGTCCAAACTTCAACTCTTATGCACTCTATGCATACGACTCTGTTTGGTTAGCAGCCCGTGCTCTTGACACCTTTATTAAAGAAGGTGGAAATATATCCTTTTCCAATGACCTGAATTTACGTGAAAACAATGGAAGCATGTTGCAGTTAAAATCCCTCCGAGTGTTTAACGACGGTGAACAACTTCTACAAACAATTAAGAGAACAAACTTCACTGGTGTAAGCGGGCAAATTCAATTTGGGGATGATAGAAATTTGATTCATCCAGCTTATGATATCCTAAACATTGGGGGAACTGGTTCACGTAGAATTGGCTACTGGTCAAATTATTCTGGTCTATCAACTATTGCACCAGAGAACTTGTATACCAAGCATCTCAATGCTTCCTCAAATAACCATCTCTATAGTGTTATATGGCCAGGAGAAATAACGACCGTTCCTCGAGGATGGGTGTTTCCACACAATGGGAAACCATTACAAATTGTAGTACCTAACCGAGTGAGTTACAAAGCCTTTGTGTTTAAAGACAAGAACCCTCCAGGAGTTAAAGGATATTGTATAGATGTATTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCTCACATATATATATTATATGGAGATGGAAAGGACACTCCTGAGTACAACAGTCTTGTATATGAGGTTTCACAGAATAAATACGATGCAGCTGTTGGAGATATTACTATTGTAACGAATAGGACAAAGATTGTAGACTTCACACAACCATTTATGGAGTCGGGACTTGTTGTAGTTACTGTCGTCAAACAGGAGAAGTCTAGTCCATGGGCTTTTCTCAGGCCGTTTACTGTTCAAATGTGGGCTGTCACTGCAATATTTTTTATTTTTGTTGGAGCAGTTGTCTGGATTCTCGAGCATCGGACTAATGAAGAGTTTCGTGGTCCGCCAAGGAAACAATTAATTACAATATTTTGGTTTAGTTTCTCAACAATGTTCTTTTCTCATAAGGAAAATACTGTAAGCACCCTTGGACGGTTGGTGCTGATAATATGGCTCTTTGTTGTGTTAATTATCAACTCAAGCTACACAGCTAGTTTGACGTCGATCTTAACAGTGCAACAACTAACGTCAAAGATTGAAGGGATTGATAGCTTAATCTCTAGCACAGATGCCATTGGAGTTCAAGAAGGGTCATTTGCATTGAATTATTTGATTGATGAGCTGAATATAGCAGCATCTAGGATCATTAAATTGAAAAATCAAGAGGAATATGCTGATGCTCTTAAGCGTGGATCGGGAAATGGTGGGGTCGCTGCCATTGTTGACGAGCTTCCTTATGTTGAGCTTTTTTTGGCTGGTACTGATTGCCTATACAGGACAGTTGGACAGGAGTTCACGAAAAGTGGATGGGGATTTGCATTCCAAAGGGACTCTCCTCTTGCAGTTGATTTGTCAACAGCCATTCTTCAACTTTCAGAGAATGGTGATCTTCAAAAGATCCACGACAAATGGCTCTCGCGAACTGAGTGTTCGATGAGCTTGAACCAAGTCGACGTAAGCCAACTATCACTAAGTAGCTTTTGGGGATTGTTCCTAATTTGTGGCATTGCATGTTTTGTTGCTCTTTCGGTATTCTTCTTTCGAGTATTATTCCAATATCGAAGATTTACCCCAGAAAACCAGCCTGAAGTTGAAGAGATTGAACCTGTTAGGACGAGACGCCTTAGTCGTACAACTAGCTTCATGCACTTTGTAGATAAAAAAGAAGCAGAAGTCAAAGGTAAACTTAAAAAAAAAACAAGTGATAAGAAACAAACTAGTCAGAGCTTAGAGGACCACCTTGATTCACCTCCTTGA 2916 40.12 MIYGIDYGVLQYIGNEVLLVNYLMKFDVRYLKRNGHWVKSRVMLFALLLLFGMWTPLGVIGVSSSNQRVLNIGVLFTLDSVIGRSAQPAILAALDDVNADNNILPGTKLNLILHDTNCSGFLGTLEGQRVTIDSMNMYLALQLMEDEVVVVIGPQSSGIVHVISHVVNELHIPLLSFGATDPALSAQQYQYFVRTTQSDYFQMNAIADMVDYFKWREVVAIFVDDDNGRSGISALNDALVKKRAKISYKAAFPPGSSNSEISDLLASINLMESRVYIVHVNPDTGLAIFSIAKKLQMMGSGYVWIATDWLPSFLDSFETNSPDVMNQLQGVVALRHHTPDDNRKKNFVSKWRNLKYKKSPNFNSYALYAYDSVWLAARALDTFIKEGGNISFSNDLNLRENNGSMLQLKSLRVFNDGEQLLQTIKRTNFTGVSGQIQFGDDRNLIHPAYDILNIGGTGSRRIGYWSNYSGLSTIAPENLYTKHLNASSNNHLYSVIWPGEITTVPRGWVFPHNGKPLQIVVPNRVSYKAFVFKDKNPPGVKGYCIDVFEAAINLLPYPVPHIYILYGDGKDTPEYNSLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKQEKSSPWAFLRPFTVQMWAVTAIFFIFVGAVVWILEHRTNEEFRGPPRKQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDSLISSTDAIGVQEGSFALNYLIDELNIAASRIIKLKNQEEYADALKRGSGNGGVAAIVDELPYVELFLAGTDCLYRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSMSLNQVDVSQLSLSSFWGLFLICGIACFVALSVFFFRVLFQYRRFTPENQPEVEEIEPVRTRRLSRTTSFMHFVDKKEAEVKGKLKKKTSDKKQTSQSLEDHLDSPP 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11497814 11503282 - ClCG02G008640.2 Cla02g00841 266967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00841 971 MobiDBLite consensus disorder prediction 945 971 - -
Cla02g00841 971 PANTHER GLUTAMATE RECEPTOR 3.4 61 952 - -
Cla02g00841 971 SUPERFAMILY Periplasmic binding protein-like I 65 509 IPR028082 -
Cla02g00841 971 Pfam Bacterial extracellular solute-binding proteins, family 3 525 859 IPR001638 -
Cla02g00841 971 Gene3D - 812 865 - -
Cla02g00841 971 SUPERFAMILY Periplasmic binding protein-like II 492 859 - -
Cla02g00841 971 PRINTS Metabotropic glutamate GPCR signature 151 177 IPR000337 GO:0004930|GO:0007186|GO:0016021
Cla02g00841 971 PRINTS Metabotropic glutamate GPCR signature 183 202 IPR000337 GO:0004930|GO:0007186|GO:0016021
Cla02g00841 971 PRINTS Metabotropic glutamate GPCR signature 98 117 IPR000337 GO:0004930|GO:0007186|GO:0016021
Cla02g00841 971 PRINTS Metabotropic glutamate GPCR signature 218 235 IPR000337 GO:0004930|GO:0007186|GO:0016021
Cla02g00841 971 PRINTS Metabotropic glutamate GPCR signature 83 98 IPR000337 GO:0004930|GO:0007186|GO:0016021
Cla02g00841 971 PRINTS Metabotropic glutamate GPCR signature 202 218 IPR000337 GO:0004930|GO:0007186|GO:0016021
Cla02g00841 971 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 61 952 - -
Cla02g00841 971 PIRSF IGluLR_plant 39 969 IPR017103 -
Cla02g00841 971 SMART GluR_14 518 860 IPR001320 GO:0015276|GO:0016020
Cla02g00841 971 Gene3D - 627 759 - -
Cla02g00841 971 CDD PBP1_GABAb_receptor_plant 71 472 IPR044440 -
Cla02g00841 971 CDD GluR_Plant 515 858 - -
Cla02g00841 971 Gene3D - 198 471 - -
Cla02g00841 971 Gene3D - 89 446 - -
Cla02g00841 971 Pfam Ligand-gated ion channel 860 891 IPR001320 GO:0015276|GO:0016020
Cla02g00841 971 Gene3D - 511 626 - -
Cla02g00841 971 Pfam Receptor family ligand binding region 87 455 IPR001828 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g00183 Cla02g00841 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00841 Cla-Chr2:11497814 Cla11g01836 Cla-Chr11:31994387 2.02E-92 dispersed
Cla02g00838 Cla-Chr2:11431775 Cla02g00841 Cla-Chr2:11497814 0 proximal
Cla02g00841 Cla-Chr2:11497814 Cla02g00842 Cla-Chr2:11583480 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00841 K05387 - csv:101215485 1636.31