Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00842 ATGTTGAAAACATTGCAAATGACCCTCCCACTGTCGCTACGCGATTCTTTTAGCTCAGTGACTGGAGTGTGTTTCGATGGCTCTCGAGGAAAAAAACTCTGCGGTTCAGTGATTCTTAGCTTTGACAAGCAGATCAGTAAGGGGAGAGCAATTTTGTGTTTGTTAGCTGTGAACTTGCAGTTGTTAAGTCTGTTCTGTAACAGTAGTGGTTTGGTAGACATTGTCGGAGAACTGCTCGGAGTTCGTCGATCAACAATGATTGATGGGATCATCGGCGCAACCAGCACCACGTTGTTAAACAGCTTTTGGGCGTCAAATCGGATGCGTGCATTAATTGGGAACAGGGTGGAATGCTTGTTCTTGAGCTCCTTCTCTTCATTTAAAACTTTCCTGGTTATCACCAATTGCTTTTTGCCTGTTCAGCAGTCTCCAGCTCTTTTGATATGGGCATTTCTTGCTGGTTCTGCATGTTGCCAAAGGCCTGCAGTTGTGAACATTGGTGCAGTTTTCACTTTTGATTCAATTATAGGAAGAGTGGCGAAGGTGGCAATGGAAGCTGCAGTTTCGGATGTGAATGCAGATCCTTCCATTCTCAATGGAACAAAGCTGAATTTGGTCATGGCAGATACACATTGCAATGTTCTCTTGGGTTCTATTGGAGCTTTCCAGGTTCTTGAGAAAGATGTAGTAGCCATAGTTGGGCCTCAATCTTCAGTTGTAGCTCATATGGTTCTACAGATTGCTAATAATCTCCAAGTGCCTCTTATATCATATGCTGCCACTGACCCAACTTTATCTGCTCTCCAATTCCCCTTCTTCCTACGAACTACTCAGAGTGATGCCTACCAAATGACTGCTATGGCAGATTTAATTGACTTTTATGAGTGGAAGGAGGTGATCATGATCTTTGTGGATGATGATTATGGTAGAAATGGAATATCCACTTTAACTGATGAGCTTGACAAAAGGATGTTTAAAATTTCTTACAAAATACCCTTACCTTCTCATTTTAATCCCAGTGAAATCACAGTCATGCTCAATAAATCCAAGTTGCTCGGTCCTCGTGTCTATGTTGTTCATGTCAATCCTGATCCTAGATTAAGTATCTTCAAAATAGCCCATCAACTTGATATGATGACAAGTGATTATGTGTGGCTGGCAACAGATTGGCTTTCTACTACCTTAGATTCTGTTCTGCCTGTGCAACAAACCTCTATAGACATCCTTCAAGGTGTGGTTGTACTTCGTCAACATATTCCTGAATCCAACCAACAAACAACATTATGGTCTCGGTTAAGGAAGATGCTGCCAGAAGGCTCCAGAAATTCTTCGTTGAATGTCTATGCTCTTAGTGCCTATGATACGATTCAAGTAGCTGCACGTGCAATTGATAAGTTTCTAAATGAAGGTAGGAGCATTACCTTCTCATTGAAGAACAAGTTTCATGATTTGAATACATCTAGAATGCCCTGGGGAAAGCTCAAAATATTTGATGATGGTGCTCTTCTTTTGAGCATATTGTTGCAGGCAAACTTTACTGGTTTAAGTGGTCAGATTGAGTTTAATTCAGATCGGAACCTTGTCAATAGAGGCTATGAGGTGATCAATATTGATCAGTCGGGACTGCGTAGAGTTGGTTATTGGTCCAATGTCACAGGCTTTACAATCCAATCCCCAGAAACTCTGAAGCAGAAACGAATTAGTTATTCCCACCTGAACCAGGCTCTTGGCAATGTTACCTGGCCTGGTGGAAAGACAGAAAGACCGCGTGGATGGGTGATTGCAGACAATGAAAGACCATTAATAATTGGAGTGCCACGTAGAGTAAGTTTCATTGAATTTGTTACTGCAGTCAATGGAAGCCACGAAAACATTGAAGGATTCTGTATTGATCTGTTCAATGAAGCAAGAAAGCTGGTTCCTTATGATGTTCCTTACAGATTTATACCTTTTGGAAATGGCTACTCCAATCCTAGTTATGATGACCTTGTGAAGAACGTTGCAAATGGTATATTTGATGCAGCTGTTGGAGATATTGCAATTGTTACCAATCGAACAAGGATTGTGGATTTTTCTCAGCCTTTTGCTTCTACCGGGCTTGTTATTGTGGCTCCAATAAAAAATTCAAAGTCAAATGCTTGGGTGTTCCTTAAACCATTTACAACAGAGATGTGGTGCGTAACATCGGCGTCCTTTTTTATGATTGGGGCAGTCATATGGCTTCTTGAGCATCGAGTAAATGATGATTTCCGTGGTCCACCAAAGAGGCAGCTAGTGACAGTAATACTGTTCAGCTTCTCGACATTGTTCAAAACGAATCAGGAAGCTACTGTAAGTCCACTTGGACGTATGGTAATGGTGGTGTGGCTTTTCTTATTGATGGTTATCACGTCAAGCTATACAGCCAGTCTCACTTCAATCCTTACAGTTCAGCAGCTTTCATCTCCCATTAAAGGACTTGATGACTTGATTACTAATGAACAGCCAATTGGCTACCAGGTAGGATCATTTGCGTATAGCTATCTGACCGAGAGTCTTTACCTTCCACGATCGAGGCTTGTATCTCTAGGCTCTCCAGAAGAGTATGAATCAGCACTGCTAAAGGGGCCATTCAAAAAAGGAGGGGTGGCGGCTATTGCTTTTCAGAGAGGATCTCCACTTGCGGTAGACATGTCAACTGCAATTCTAAAGCTTTCTGAGAATGGAAAGCTTCAGAAGATCCACGAGAAGTGGTTTTGTAAGATGGGTTGTCCTGGAGAGAGGAGAAGGAAGTCTGAGCCTATCCAGCTTCAGTTGGTCAGCTTCTGGGGTCTGTATCTCTTGTGCGGTGCCTTTTCACTCGTTGCTCTTCTTATATTTTTGCTCCGTATAGTTCGACAATTTGCTCGTTACATACGACAACAGAAGGAATCTTCTCATGCAGAATTGGTGTCATCAAATTCAAACTCAAGCTGGACTCAGGTTATATATAAGTTTATTGACTTTGTTGATGAGAAGGAAGAAGCCATCAAGAGACTTTTTCGAAAGTATGATAATCAGAATCAGGCTAGCCAATAG 3057 41.84 MLKTLQMTLPLSLRDSFSSVTGVCFDGSRGKKLCGSVILSFDKQISKGRAILCLLAVNLQLLSLFCNSSGLVDIVGELLGVRRSTMIDGIIGATSTTLLNSFWASNRMRALIGNRVECLFLSSFSSFKTFLVITNCFLPVQQSPALLIWAFLAGSACCQRPAVVNIGAVFTFDSIIGRVAKVAMEAAVSDVNADPSILNGTKLNLVMADTHCNVLLGSIGAFQVLEKDVVAIVGPQSSVVAHMVLQIANNLQVPLISYAATDPTLSALQFPFFLRTTQSDAYQMTAMADLIDFYEWKEVIMIFVDDDYGRNGISTLTDELDKRMFKISYKIPLPSHFNPSEITVMLNKSKLLGPRVYVVHVNPDPRLSIFKIAHQLDMMTSDYVWLATDWLSTTLDSVLPVQQTSIDILQGVVVLRQHIPESNQQTTLWSRLRKMLPEGSRNSSLNVYALSAYDTIQVAARAIDKFLNEGRSITFSLKNKFHDLNTSRMPWGKLKIFDDGALLLSILLQANFTGLSGQIEFNSDRNLVNRGYEVINIDQSGLRRVGYWSNVTGFTIQSPETLKQKRISYSHLNQALGNVTWPGGKTERPRGWVIADNERPLIIGVPRRVSFIEFVTAVNGSHENIEGFCIDLFNEARKLVPYDVPYRFIPFGNGYSNPSYDDLVKNVANGIFDAAVGDIAIVTNRTRIVDFSQPFASTGLVIVAPIKNSKSNAWVFLKPFTTEMWCVTSASFFMIGAVIWLLEHRVNDDFRGPPKRQLVTVILFSFSTLFKTNQEATVSPLGRMVMVVWLFLLMVITSSYTASLTSILTVQQLSSPIKGLDDLITNEQPIGYQVGSFAYSYLTESLYLPRSRLVSLGSPEEYESALLKGPFKKGGVAAIAFQRGSPLAVDMSTAILKLSENGKLQKIHEKWFCKMGCPGERRRKSEPIQLQLVSFWGLYLLCGAFSLVALLIFLLRIVRQFARYIRQQKESSHAELVSSNSNSSWTQVIYKFIDFVDEKEEAIKRLFRKYDNQNQASQ 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11583480 11590182 - ClCG02G008650.2 Cla02g00842 266968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00842 1018 SUPERFAMILY Periplasmic binding protein-like I 157 593 IPR028082 -
Cla02g00842 1018 CDD PBP1_GABAb_receptor_plant 165 555 IPR044440 -
Cla02g00842 1018 PANTHER GLUTAMATE RECEPTOR 3.7 148 879 - -
Cla02g00842 1018 PANTHER GLUTAMATE RECEPTOR 3.7 881 1015 - -
Cla02g00842 1018 Gene3D - 279 553 - -
Cla02g00842 1018 SUPERFAMILY Periplasmic binding protein-like II 576 912 - -
Cla02g00842 1018 PIRSF IGluLR_plant 139 880 IPR017103 -
Cla02g00842 1018 PIRSF IGluLR_plant 879 1018 IPR017103 -
Cla02g00842 1018 Pfam Receptor family ligand binding region 182 538 IPR001828 -
Cla02g00842 1018 Pfam Ligated ion channel L-glutamate- and glycine-binding site 617 704 IPR019594 GO:0004970|GO:0016020
Cla02g00842 1018 Gene3D - 713 845 - -
Cla02g00842 1018 Pfam Ligand-gated ion channel 722 943 IPR001320 GO:0015276|GO:0016020
Cla02g00842 1018 SMART GluR_14 602 914 IPR001320 GO:0015276|GO:0016020
Cla02g00842 1018 Coils Coil 996 1016 - -
Cla02g00842 1018 Gene3D - 609 712 - -
Cla02g00842 1018 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 148 879 - -
Cla02g00842 1018 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 881 1015 - -
Cla02g00842 1018 Gene3D - 182 529 - -
Cla02g00842 1018 Gene3D - 858 919 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00183 Cla-Chr2:1867212 Cla02g00842 Cla-Chr2:11583480 5.10E-95 dispersed
Cla02g00838 Cla-Chr2:11431775 Cla02g00842 Cla-Chr2:11583480 0 dispersed
Cla02g00842 Cla-Chr2:11583480 Cla11g01836 Cla-Chr11:31994387 1.52E-62 dispersed
Cla02g00841 Cla-Chr2:11497814 Cla02g00842 Cla-Chr2:11583480 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00842 K05387 - csv:101215715 1620.52