Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00871 ATGGATTGGACTAGAGGCCACCTCATCGGCCATGGCTCCTCCGCTACCGTCTTCCTCGCCACTTCTTCTTCCACCGGTGATGTCTTCGCCGTCAAATCCGCCGACCTTTCACACTCTCAATCTCTACAAAGAGAGCAACAGTTTCTTTCTTCTTTTGCCTCTCCTTATATAGTTTCTTATAGAGGCTTTGAGGTTTGTAGAGAACAGAGTGGGGTCATGATGTTCAATCTTTTCATGGAGTATTTCCCCAACGGTTCGCTTGCGGATGTAATTCGCCGCGGTGGAGGGCGGCGGCTCGATGAGGACACGATCGGAATCTACACGCGGCAGTTACTAATGGGTCTGCAGTACATTCATTCCAAAGGCGTAGTACATTGCGACATTAAAGCCCACAACATTTTGATTGGTCGAGACGGTGTCGCCAAATTGGCTGATTTCGGGTGCGCCAGGTGGGCGAAGAGCCAAACCGATCCAATTGGTGGCACGCCGCTGTTCATGGCGCCGGAAGTGGCTCGCGGTGAACAACAAGGTTTCGCCTCCGACATTTGGTCAATTGGGTGTACAATTATCGAAATGGCGACCGGCGGCGGCTCACCCTGGCCCAAGACAACCGACGAAACCAACCCGATTTCTGCCCTGTACCGAATTGGGTATTCCGGCGAGTCACCGGAAATTCCTTGTTTTTTATCCCATGAAGCAAAGGATTTCTTAGAGAAGTGCTTAAAGAGGAATCCAAGTGAGAGATGGACAGCCAATCAGCTACTGAATCACCCATTTTTAAGCTGGGAATTGAATTCCAGATCCACAACACCAAGAAAAATCCAGGAAATTCATTCAGATTCTCCAACGAGTATTCTAGAACAGGGGATTTGGAGATCAATTGAAGAAAGCAAATTGATTAGAGGCAATGATTGGAGGAGGGAGAAGGCAGCAGCAGAGCAGATCCGAGGGCTGTGGATGGTTTCAGGAGAGCCGAGATGGAGAGAAGATGAGAATTGGATTACAATTAGAAGAAAAGAGAAAGTGGGTGATGAAAGGGAAATGATTGGTGGGTCAGAGTGTGAAGTGAAAAGATGTAGTAATAAAAGTAATAGTTGGGTTGAGGAAGAGAGAGGTAGTGGCGGCAAAGAGTGGTTGGAAATGGAATTTGGGAATATTAGTTGTAGAATTAGTAGGAATGATTTGGGAGACCATAGTTGTAGGAATATTATTAGTCTTGTAAATAATAATAATAATAATAATCCTTTATCCTTTCATACGCATACACATACACTTAAATTTCTTCCTTTAATGCCAACTATATTATGA 1308 45.49 MDWTRGHLIGHGSSATVFLATSSSTGDVFAVKSADLSHSQSLQREQQFLSSFASPYIVSYRGFEVCREQSGVMMFNLFMEYFPNGSLADVIRRGGGRRLDEDTIGIYTRQLLMGLQYIHSKGVVHCDIKAHNILIGRDGVAKLADFGCARWAKSQTDPIGGTPLFMAPEVARGEQQGFASDIWSIGCTIIEMATGGGSPWPKTTDETNPISALYRIGYSGESPEIPCFLSHEAKDFLEKCLKRNPSERWTANQLLNHPFLSWELNSRSTTPRKIQEIHSDSPTSILEQGIWRSIEESKLIRGNDWRREKAAAEQIRGLWMVSGEPRWREDENWITIRRKEKVGDEREMIGGSECEVKRCSNKSNSWVEEERGSGGKEWLEMEFGNISCRISRNDLGDHSCRNIISLVNNNNNNNPLSFHTHTHTLKFLPLMPTIL 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12323447 12324754 - ClCG02G008920.2 Cla02g00871 266997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00871 435 Pfam Protein kinase domain 5 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00871 435 PRINTS Tyrosine kinase catalytic domain signature 79 92 IPR001245 GO:0004672|GO:0006468
Cla02g00871 435 PRINTS Tyrosine kinase catalytic domain signature 117 135 IPR001245 GO:0004672|GO:0006468
Cla02g00871 435 PRINTS Tyrosine kinase catalytic domain signature 180 202 IPR001245 GO:0004672|GO:0006468
Cla02g00871 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Cla02g00871 435 ProSiteProfiles Protein kinase domain profile. 3 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00871 435 PANTHER MAP KINASE KINASE KINASE 1 365 - -
Cla02g00871 435 SMART serkin_6 3 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00871 435 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Cla02g00871 435 Gene3D Transferase(Phosphotransferase) domain 1 2 321 - -
Cla02g00871 435 CDD STKc_MAPKKK 2 260 - -
Cla02g00871 435 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 365 - -
Cla02g00871 435 SUPERFAMILY Protein kinase-like (PK-like) 2 274 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g00198 Cla02g00871 CCT
Cla02g00871 Cla02g00198 ECH
Cla02g00198 Cla02g00871 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00871 Cla-Chr2:12323447 Cla09g01020 Cla-Chr9:10720401 3.59E-94 dispersed
Cla08g01536 Cla-Chr8:28087275 Cla02g00871 Cla-Chr2:12323447 3.57E-39 dispersed
Cla03g00057 Cla-Chr3:605060 Cla02g00871 Cla-Chr2:12323447 2.49E-65 transposed
Cla01g02127 Cla-Chr1:35533052 Cla02g00871 Cla-Chr2:12323447 5.77E-96 wgd
Cla02g00198 Cla-Chr2:2096574 Cla02g00871 Cla-Chr2:12323447 1.24E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80339 PF00069 Pkinase 4.50E-58 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00871 K20716 - csv:101208274 664.84