Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cla02g00899	CCAAACGACGCGACGGACTCTAACAACTCCCCTTCTGCAGTACCCCTTACCTGTTTTCTTGGAGTGTTTCTTCTCCGGCGGCGACTTTCCCGATTCTCCGTAATTCAGAATTCTAATTCCGGCCTTCCGGCATCCGATAATCGGACGTTCTTTTCTGTTTCACGTCGCGAGCGCTGGAAAATTGTATCTCGTAAGCGTTTGGAAATGGCGGATTCTGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTGTCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTAAGCAGGATCATGAAGAAGGCGTTACCAGCAAACGCGAAGATCTCGAAAGATGCAAAAGAAACTGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAAAGAAAGACAATCAACGGCGACGATTTGTTGTGGGCCATGACCACGCTTGGATTCGAAGAGTATGTGGAACCACTCAAGACTTATCTGCAGAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTGCTGGTGGTGGGACCGGCGGCAGTGGGACAAATAGTGGTGGTGGTGGAGTCAACTCTGGTACTGCTGGTGGTGGTGGTGGCGGCGGTGGATTTAACGGAGTGGGTGGAATTTATGGTGGGATGATGATGATGGGGCATCATCAGGGAGGCGTTTATGGTGCTGGTGGATTTCACCATATGGGAATTGGCGGTGGGAAGGGTGGAAGTGGTGGTTCCGGCACCGGACACCGGTAG	822	52.19	PNDATDSNNSPSAVPLTCFLGVFLLRRRLSRFSVIQNSNSGLPASDNRTFFSVSRRERWKIVSRKRLEMADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGAGGGTGGSGTNSGGGGVNSGTAGGGGGGGGFNGVGGIYGGMMMMGHHQGGVYGAGGFHHMGIGGGKGGSGGSGTGHR	273

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
2	12994920	12996277	-	ClCG02G009200.1	Cla02g00899	267025

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cla02g00899	273	PRINTS	CCAAT-binding transcription factor subunit A signature	123	141	-	-
	Cla02g00899	273	PRINTS	CCAAT-binding transcription factor subunit A signature	142	160	-	-
	Cla02g00899	273	PRINTS	CCAAT-binding transcription factor subunit A signature	161	179	-	-
	Cla02g00899	273	Pfam	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	95	159	IPR003958	-
	Cla02g00899	273	PANTHER	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3	69	249	-	-
	Cla02g00899	273	MobiDBLite	consensus disorder prediction	74	89	-	-
	Cla02g00899	273	ProSitePatterns	NF-YB/HAP3 subunit signature.	126	142	IPR003956	GO:0005634\|GO:0006355\|GO:0043565
	Cla02g00899	273	SUPERFAMILY	Histone-fold	92	196	IPR009072	GO:0046982
	Cla02g00899	273	MobiDBLite	consensus disorder prediction	183	222	-	-
	Cla02g00899	273	Gene3D	Histone, subunit A	82	202	IPR009072	GO:0046982
	Cla02g00899	273	PANTHER	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	69	249	IPR027113	GO:0001228\|GO:0006355\|GO:0016602
	Cla02g00899	273	MobiDBLite	consensus disorder prediction	70	89	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Cla02g00296	Cla02g00899	CCT
	Cla02g00899	Cla02g00296	ECH
	Cla02g00296	Cla02g00899	ECH

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cla02g00899	Cla-Chr2:12994920	Cla07g00885	Cla-Chr7:24476703	4.19E-63	dispersed
	Cla02g00899	Cla-Chr2:12994920	Cla02g01361	Cla-Chr2:27936449	6.25E-52	transposed

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	60631	PF00808	CBFD_NFYB_HMF	3.40E-27	CL0012	Cla	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cla02g00899	K08065		-	csv:101219076	255.758