Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00899 CCAAACGACGCGACGGACTCTAACAACTCCCCTTCTGCAGTACCCCTTACCTGTTTTCTTGGAGTGTTTCTTCTCCGGCGGCGACTTTCCCGATTCTCCGTAATTCAGAATTCTAATTCCGGCCTTCCGGCATCCGATAATCGGACGTTCTTTTCTGTTTCACGTCGCGAGCGCTGGAAAATTGTATCTCGTAAGCGTTTGGAAATGGCGGATTCTGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTGTCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTAAGCAGGATCATGAAGAAGGCGTTACCAGCAAACGCGAAGATCTCGAAAGATGCAAAAGAAACTGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAAAGAAAGACAATCAACGGCGACGATTTGTTGTGGGCCATGACCACGCTTGGATTCGAAGAGTATGTGGAACCACTCAAGACTTATCTGCAGAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTGCTGGTGGTGGGACCGGCGGCAGTGGGACAAATAGTGGTGGTGGTGGAGTCAACTCTGGTACTGCTGGTGGTGGTGGTGGCGGCGGTGGATTTAACGGAGTGGGTGGAATTTATGGTGGGATGATGATGATGGGGCATCATCAGGGAGGCGTTTATGGTGCTGGTGGATTTCACCATATGGGAATTGGCGGTGGGAAGGGTGGAAGTGGTGGTTCCGGCACCGGACACCGGTAG 822 52.19 PNDATDSNNSPSAVPLTCFLGVFLLRRRLSRFSVIQNSNSGLPASDNRTFFSVSRRERWKIVSRKRLEMADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGAGGGTGGSGTNSGGGGVNSGTAGGGGGGGGFNGVGGIYGGMMMMGHHQGGVYGAGGFHHMGIGGGKGGSGGSGTGHR 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12994920 12996277 - ClCG02G009200.1 Cla02g00899 267025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00899 273 PRINTS CCAAT-binding transcription factor subunit A signature 123 141 - -
Cla02g00899 273 PRINTS CCAAT-binding transcription factor subunit A signature 142 160 - -
Cla02g00899 273 PRINTS CCAAT-binding transcription factor subunit A signature 161 179 - -
Cla02g00899 273 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 95 159 IPR003958 -
Cla02g00899 273 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 69 249 - -
Cla02g00899 273 MobiDBLite consensus disorder prediction 74 89 - -
Cla02g00899 273 ProSitePatterns NF-YB/HAP3 subunit signature. 126 142 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cla02g00899 273 SUPERFAMILY Histone-fold 92 196 IPR009072 GO:0046982
Cla02g00899 273 MobiDBLite consensus disorder prediction 183 222 - -
Cla02g00899 273 Gene3D Histone, subunit A 82 202 IPR009072 GO:0046982
Cla02g00899 273 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 69 249 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cla02g00899 273 MobiDBLite consensus disorder prediction 70 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00899 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - csv:101219076 255.758
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla02g00296 Cla02g00899 CCT
Cla02g00899 Cla02g00296 ECH
Cla02g00296 Cla02g00899 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00899 Cla-Chr2:12994920 Cla07g00885 Cla-Chr7:24476703 4.19E-63 dispersed
Cla02g00899 Cla-Chr2:12994920 Cla02g01361 Cla-Chr2:27936449 6.25E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g705 . Blo15g00440 . . Bpe12g00177 . Bma03g00666 Bma08g00680 . Cmo19g00866 . . . . Sed05g2121 Cpe15g00683 Cpe04g00651 Bhi05g01484 Tan02g0498 Cmetu01g1553 Lac12g0401 Hepe02g0314 . . Cla02g00296 Cam02g0305 Cec02g0305 Cco02g0308 Clacu02g0297 Cmu02g0294 Cre02g0628 . . Cone8ag1365 . . Csa07g00248 . Cme01g00556 . Blo13g00439 . Bda15g00992 . . . . . . . . Cma19g00848 Car11g01436 Car19g00661 . . . . . . . . . Cla02g00899 Cam02g0911 Cec02g0951 Cco02g1012 Clacu02g0948 Cmu02g0921 Cre02g1245 Lsi11g01342 Csa06g00967 Chy01g00533 Cme11g00968
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g00422 . 13 177 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.2 9.5e-49 190.7
Cla02g00899 CCT,ECH 74 185 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 7.5e-38 154.5
Cla10g00422 . 37 199 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.1 4.6e-51 198.4
Cla07g00885 . 10 138 CCAAT-HAP3 Transcription Factor Family AT1G21970 52.6 2.2e-37 152.9
Cla02g00899 CCT,ECH 69 196 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 1.4e-56 216.1
Cla10g00404 . 1 151 CCAAT-HAP3 Transcription Factor Family AT4G14540 67.1 4.5e-50 194.5
Cla07g00885 . 29 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 6.1e-47 184.1
Cla02g01361 . 860 965 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.4 2.4e-43 172.2
Cla09g00572 . 175 270 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 2.0e-37 152.5
Cla02g01361 . 847 966 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.3 1.2e-49 193.0
Cla02g00899 CCT,ECH 69 181 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.5e-42 169.5
Cla10g00404 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.3 3.6e-41 164.9
Cla07g00885 . 16 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.0 3.6e-41 164.9
Cla09g00572 . 171 266 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.9 2.9e-38 155.2
Cla09g00572 . 173 270 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.1e-43 173.3
Cla10g00404 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 6.1e-39 157.5
Cla02g00899 CCT,ECH 86 185 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 6.1e-39 157.5
Cla07g00885 . 32 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 5.1e-38 154.5
Cla02g01361 . 853 994 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.9 4.5e-56 214.5
Cla10g01956 . 132 262 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.6 1.2e-48 189.9
Cla02g00899 CCT,ECH 74 184 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.4e-44 176.4
Cla07g00885 . 31 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 4.1e-41 164.9
Cla10g00404 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.6 2.7e-40 162.2
Cla09g00572 . 174 276 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 8.0e-37 150.6
Cla07g00885 . 19 133 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.2e-44 176.0
Cla02g00899 CCT,ECH 90 191 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 3.8e-44 175.3
Cla10g00404 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 79.2 8.7e-41 164.1
Cla02g01361 . 873 973 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 1.3e-39 160.2
Cla09g00572 . 175 275 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.3 4.8e-39 158.3
Cla02g00899 CCT,ECH 69 200 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.5 4.4e-52 201.4
Cla10g00404 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.6 2.0e-49 192.6
Cla07g00885 . 27 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 8.8e-45 177.2
Cla02g01361 . 873 985 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.4 2.2e-43 172.6
Cla09g00572 . 175 271 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.2e-38 156.8
Cla02g01361 . 858 994 CCAAT-HAP3 Transcription Factor Family AT3G53340 79.6 4.6e-56 214.5
Cla10g01956 . 132 261 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.7 1.9e-46 182.6
Cla02g00899 CCT,ECH 74 193 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.8e-45 178.7
Cla10g00404 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.5 5.5e-41 164.5
Cla07g00885 . 20 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 7.1e-41 164.1
Cla09g00572 . 174 276 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 1.6e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60631 PF00808 CBFD_NFYB_HMF 3.40E-27 CL0012 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00899 Cla_Chr02 FPKM 4.389904 3.711771 3.085558 3.052975 8.110736 7.325872 7.836195 6.684539 6.437232 7.136378