Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00899 CCAAACGACGCGACGGACTCTAACAACTCCCCTTCTGCAGTACCCCTTACCTGTTTTCTTGGAGTGTTTCTTCTCCGGCGGCGACTTTCCCGATTCTCCGTAATTCAGAATTCTAATTCCGGCCTTCCGGCATCCGATAATCGGACGTTCTTTTCTGTTTCACGTCGCGAGCGCTGGAAAATTGTATCTCGTAAGCGTTTGGAAATGGCGGATTCTGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTGTCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTAAGCAGGATCATGAAGAAGGCGTTACCAGCAAACGCGAAGATCTCGAAAGATGCAAAAGAAACTGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAAAGAAAGACAATCAACGGCGACGATTTGTTGTGGGCCATGACCACGCTTGGATTCGAAGAGTATGTGGAACCACTCAAGACTTATCTGCAGAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTGCTGGTGGTGGGACCGGCGGCAGTGGGACAAATAGTGGTGGTGGTGGAGTCAACTCTGGTACTGCTGGTGGTGGTGGTGGCGGCGGTGGATTTAACGGAGTGGGTGGAATTTATGGTGGGATGATGATGATGGGGCATCATCAGGGAGGCGTTTATGGTGCTGGTGGATTTCACCATATGGGAATTGGCGGTGGGAAGGGTGGAAGTGGTGGTTCCGGCACCGGACACCGGTAG 822 52.19 PNDATDSNNSPSAVPLTCFLGVFLLRRRLSRFSVIQNSNSGLPASDNRTFFSVSRRERWKIVSRKRLEMADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGAGGGTGGSGTNSGGGGVNSGTAGGGGGGGGFNGVGGIYGGMMMMGHHQGGVYGAGGFHHMGIGGGKGGSGGSGTGHR 273
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 12994920 12996277 - ClCG02G009200.1 Cla02g00899 267025
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00899 273 PRINTS CCAAT-binding transcription factor subunit A signature 123 141 - -
Cla02g00899 273 PRINTS CCAAT-binding transcription factor subunit A signature 142 160 - -
Cla02g00899 273 PRINTS CCAAT-binding transcription factor subunit A signature 161 179 - -
Cla02g00899 273 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 95 159 IPR003958 -
Cla02g00899 273 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 69 249 - -
Cla02g00899 273 MobiDBLite consensus disorder prediction 74 89 - -
Cla02g00899 273 ProSitePatterns NF-YB/HAP3 subunit signature. 126 142 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cla02g00899 273 SUPERFAMILY Histone-fold 92 196 IPR009072 GO:0046982
Cla02g00899 273 MobiDBLite consensus disorder prediction 183 222 - -
Cla02g00899 273 Gene3D Histone, subunit A 82 202 IPR009072 GO:0046982
Cla02g00899 273 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 69 249 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cla02g00899 273 MobiDBLite consensus disorder prediction 70 89 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cla02g00296 Cla02g00899 CCT
Cla02g00899 Cla02g00296 ECH
Cla02g00296 Cla02g00899 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00899 Cla-Chr2:12994920 Cla07g00885 Cla-Chr7:24476703 4.19E-63 dispersed
Cla02g00899 Cla-Chr2:12994920 Cla02g01361 Cla-Chr2:27936449 6.25E-52 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60631 PF00808 CBFD_NFYB_HMF 3.40E-27 CL0012 Cla TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00899 K08065 - csv:101219076 255.758