Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla02g00899 | CCAAACGACGCGACGGACTCTAACAACTCCCCTTCTGCAGTACCCCTTACCTGTTTTCTTGGAGTGTTTCTTCTCCGGCGGCGACTTTCCCGATTCTCCGTAATTCAGAATTCTAATTCCGGCCTTCCGGCATCCGATAATCGGACGTTCTTTTCTGTTTCACGTCGCGAGCGCTGGAAAATTGTATCTCGTAAGCGTTTGGAAATGGCGGATTCTGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTGTCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTAAGCAGGATCATGAAGAAGGCGTTACCAGCAAACGCGAAGATCTCGAAAGATGCAAAAGAAACTGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAAAGAAAGACAATCAACGGCGACGATTTGTTGTGGGCCATGACCACGCTTGGATTCGAAGAGTATGTGGAACCACTCAAGACTTATCTGCAGAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTGCTGGTGGTGGGACCGGCGGCAGTGGGACAAATAGTGGTGGTGGTGGAGTCAACTCTGGTACTGCTGGTGGTGGTGGTGGCGGCGGTGGATTTAACGGAGTGGGTGGAATTTATGGTGGGATGATGATGATGGGGCATCATCAGGGAGGCGTTTATGGTGCTGGTGGATTTCACCATATGGGAATTGGCGGTGGGAAGGGTGGAAGTGGTGGTTCCGGCACCGGACACCGGTAG | 822 | 52.19 | PNDATDSNNSPSAVPLTCFLGVFLLRRRLSRFSVIQNSNSGLPASDNRTFFSVSRRERWKIVSRKRLEMADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGAGGGTGGSGTNSGGGGVNSGTAGGGGGGGGFNGVGGIYGGMMMMGHHQGGVYGAGGFHHMGIGGGKGGSGGSGTGHR | 273 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 12994920 | 12996277 | - | ClCG02G009200.1 | Cla02g00899 | 267025 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla02g00899 | 273 | PRINTS | CCAAT-binding transcription factor subunit A signature | 123 | 141 | - | - | |
Cla02g00899 | 273 | PRINTS | CCAAT-binding transcription factor subunit A signature | 142 | 160 | - | - | |
Cla02g00899 | 273 | PRINTS | CCAAT-binding transcription factor subunit A signature | 161 | 179 | - | - | |
Cla02g00899 | 273 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 95 | 159 | IPR003958 | - | |
Cla02g00899 | 273 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 | 69 | 249 | - | - | |
Cla02g00899 | 273 | MobiDBLite | consensus disorder prediction | 74 | 89 | - | - | |
Cla02g00899 | 273 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 126 | 142 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Cla02g00899 | 273 | SUPERFAMILY | Histone-fold | 92 | 196 | IPR009072 | GO:0046982 | |
Cla02g00899 | 273 | MobiDBLite | consensus disorder prediction | 183 | 222 | - | - | |
Cla02g00899 | 273 | Gene3D | Histone, subunit A | 82 | 202 | IPR009072 | GO:0046982 | |
Cla02g00899 | 273 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 69 | 249 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Cla02g00899 | 273 | MobiDBLite | consensus disorder prediction | 70 | 89 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla02g00296 | Cla02g00899 | CCT | |
Cla02g00899 | Cla02g00296 | ECH | |
Cla02g00296 | Cla02g00899 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g00899 | Cla-Chr2:12994920 | Cla07g00885 | Cla-Chr7:24476703 | 4.19E-63 | dispersed | |
Cla02g00899 | Cla-Chr2:12994920 | Cla02g01361 | Cla-Chr2:27936449 | 6.25E-52 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60631 | PF00808 | CBFD_NFYB_HMF | 3.40E-27 | CL0012 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla02g00899 | K08065 | - | csv:101219076 | 255.758 |