Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00917 ATGTGGAGGGGTTGCTCTGGCGGAGCTGGGGTTTTTCTCAAGCTCACAAGGTGCCTACTGAGGATGTCTTTAAGCTCCAAGTTCTCTACCACTCACGGGAAATTTCCAGCTGGGTTTAAGCTGAAGAAGGCTAAGGAGCATCTGTGTTTGTTAAATTCAACCGGAAAATGGAAGAAGAAGCTTCTCTGTCTTTGGATTTTTGCTGTAGTTATAGTTTCGAGCAGTTGGTTTTCCTTGCGTTCCTATAATGTGAATAGTGGAACAAAACAGAAGCCCTCAAAGTTGTTCGACGAAGAAACTCGAACTTTGCTGCAGCATTTCAATGTAAGCAAGAATCAGCTTCAAGCTTTAGCTTCCTTGTTATCCGACTCAGATCGGATGTCATCCACTGGGTGCGCCAATGATTTTGGATCTGACACATCACAGTTGAATGGAATTGCCTGTGCCCTAAGGTCACTGTACTGGGAGCAAGATTTGTACAAGCAGTATGTAGGGGCTGAAGAAAGTGAAGATACCAATATTGGGGAGTGTCCAATTCGAACTGAGAAGATCCCTGGAAATTCTGGCCAATTATTCTCTGATGACATAACTGTTCCATTTGCTACAGACTTATCCGCCTCGTTACTCTCTACTGGAAATCAACTTTGTGGAAAGATAATTGAACAAGCAGGAGTGCTAAGATGCCTTTTAAGAAAGCACTGGAAGAATTTCTGTAGTTTGATGATTGGATGTTTTTGGGTCCTCCTTGGAGTGATAGCGTTCCAGAAAATATCTGGCTTCCATCTAAAATTGTGGAACAAGAAACATCCAAGGCCAAATCAGCCATTAGTTCATCAACAATGGGTTTTACTACGGAGAAAGCAACATCAACAGGTCAAAGAGTCCCCTAAAGGAGCTGGGAAATGGCGGAAGGTGCTCCTAAGAATATTTATTGTAGTTGGAATCGTTGGGTCCATTTGGTTATTTTGGTACCTGAACAAGACAGCTATTTTGAGAAGAGAAGAAACACTTGCAAACATGTGTGATGAGCGAGCCCGGATGTTGCAGGACCAATTTAATGTTAGCATGAACCATGTTCATGCATTGGCCGTTCTTACCTCTACCTTCCACCATGGAAAACAGCCTTCTGCCATTGATCAGGCAATGCCCTTTCTGTTTGCCATTTGTTTTAAAACATTTGGTGAATACACAGAAAGAACAGCCTTTGAAAGGCCCCTGACCAGTGGTGTAGCTTATGCTTTGAAAGTTAATCACTCAGAAAGAGAGCATTTTGAGATGATGCATGGATGGACAATAAAGAAAATGGAGACAGAGGACCAAACTCTTGTTCAAGATTGTAATCCAGAAAATTTGGAACCTGCACCAATTCGAGATGAATATGCACCTGTCATATTTTCTCAAGAAACGGTAGCTCATATAGTTTCTATCGACATGATGTCTGGAAAAGAAGATCGTGAGAACATCTTGCGAGCTAGAGCTTCTGGAAAGGGTGTGCTTACATCTCCTTTTAAGCTTTTGAAATCTAATCACCTTGGAGTTGTCCTCACATTTGCTGTCTATAATACTGACCTCCCACCAGATGCTACTCCTGAGCAACGTATTGAAGCTACTGTTGGTTATCTAGGTGCCTCATATGATATCCCCTCACTGGTGGAAAAGCTTCTGCATCAGCTTGCTAGCAAGCAGACAATTGTTGTGAATGTTTATGATACAACCAATGATTCTGCTCCCATCAATATGTATGGTTCTGATTTTACTGATACTGGGCTACTGCATATTAGTAAACTTGATTTTGGGGATCCCTTAAGAAGGCACGAGATGCACTGTAGATTCAAGCATAAACCTCCACCTCCTTGGACCGCTATCAATTCATCTGTAGGCGTCCTAATCATTACCTTGCTGGTTGGCCATATTTTTGATGCAGCTATAAATCGGATTGCAAAAGTGGAGAATGACTATCTCGAGACGAGGGGGCTTAAAAGTCGCGCCGAAGCTGCTGATGTAGCAAAATCACAGTGTGAGTTTCTCAAGTTCGCTGGTCTTTTGCAGTTTCTGGCAACAGTTTCCCATGAGATCAGAACACCAATGAATGGTGTTTTAGGCATGCTGAAACTACTGATGGACACTAACCTTGATCCAAATCAACTGGATTTTGCCTGGACTGCTCACGAGAGTGGAAAAGATCTGATATCACTTATAAATAAGGTTCTTGATCAAGCTAAGATAGAATCAGGAAGGCTTGAACTTGAATCTGTACCTTTCGATCTGCGTGCTATAGTTGATAATGTGCTCTCACCTTTTTCACTCAAATCTAATGACAAGGGAATTGAGTTGGCTGTTTATGTCTCGGATTTGGTGCCTGAAATTGTCATTGGTGACCCTGGACGCTTTCGTCAAATAATTACTCATCTTGTTGGAAATTCACTCAAGTTTACTGATAAAGAGGGACACATACTAGTCTCAGTGCATCTGGCTGATGAAGTAAGAGGCCCAGTTGATTTCATGGACATTGTGCTTAAACAAGGCTCATATGCAAATGGAGATACATCAAACAATAGCTATACTACATTCAGTGGGTTACCTGTGGTGGATAGATGGAAAAGCTGGGAAGACTTCAAAAAGTTCAGCAGGACGAATGTGGTGGAGGAACCCAAAACACTTAGAATACTCGTGACTGTTGAGGATACAGGTGTAGGAATTCCCCAAGACGCACAAAGCCGAATATTCACTCCTTTTATGCAGGCTGATAGTTCCACTTCTCGGACGTATAGTGGTACTGGAATAGGATTGAGTATTAGCAAACGTTTGGTGGATCTCATGGATGGGGAGATTGGGTTTGTGAGTGAGCCTCGTGTAGGTAGCACATTTTCATTTACGGTTTCTTTCCAGAAAGGGGAAATAAGTTTTTGGAATACCAGGCGGCCACAGTATGATGTAGATATTGGAGAGTTCCAGGGGCTAAAAGCATTAATAATCGATAATAGCTGCATTCGAGCAGAGGTCACGAGATATCATCTGCAGAGGCTGGGGATTTCTGTTGATATAACTGTGGGTACAGAGTCTGCTTATCAATATCTATCCAATACCTCCAACACAGGCTCATCGACACAATTGGCCATGATTCTTATAGACAGAGACATTTGGGAGAAGGAAGTGGGTCCTAAGTTCGATCTTTTGTTTAAAGAGCATGTGGATAAAAGTGTGACAAAGTTCTTTCTCTTGGGAACCCCCAAAAGCTCCAATGAGCAATATGAACTTGAATCTTCTGGTCATGTAAATAATGTGTTAAGTAAACCTCTTCAGTTAGACGTGTTGGTCAGTTGCTTCCGTGAAGCCTTCAGGATTGAGAAGAGGAATCAAGTAAGTATTAAGAAACCATCCACTCTTAGGAATCTGCTGAAAGAAAAGCATATCTTGGTTGTGGATGACAATGCGGTAAACAGAAGGGTGGCAGAAGGTGCCCTAAAGAAATATGGAGCCATTGTAACTTGTGTAAAATGTGGAAAGGATGCTGTGGCTCTCCTCAATCCTCCACACAACTTTGATGCTTGCTTCATGGACCTACAGATGCCTGAGATGGATGGGTATGAAGCTACAAGACAGGTCCGTGCTGTAGAAAGTGAGGTGAACGTGAAAATTGCATCTGGAGAAGTGTCAACTGAGGATAATAAAGTCCATTGGCACACGCCAATATTTGCTATGACGGCGGATTTAGTTCAGGCTATGAATGAGGAGTGCCTGAAGTGTGGGATGGATGGTTATGTTGCTAAGCCATTTGAAGAGGAGCAACTTTATTCGGCTGTAGCACAATTTTTCGAGACTGCTTGA 3828 42.42 MWRGCSGGAGVFLKLTRCLLRMSLSSKFSTTHGKFPAGFKLKKAKEHLCLLNSTGKWKKKLLCLWIFAVVIVSSSWFSLRSYNVNSGTKQKPSKLFDEETRTLLQHFNVSKNQLQALASLLSDSDRMSSTGCANDFGSDTSQLNGIACALRSLYWEQDLYKQYVGAEESEDTNIGECPIRTEKIPGNSGQLFSDDITVPFATDLSASLLSTGNQLCGKIIEQAGVLRCLLRKHWKNFCSLMIGCFWVLLGVIAFQKISGFHLKLWNKKHPRPNQPLVHQQWVLLRRKQHQQVKESPKGAGKWRKVLLRIFIVVGIVGSIWLFWYLNKTAILRREETLANMCDERARMLQDQFNVSMNHVHALAVLTSTFHHGKQPSAIDQAMPFLFAICFKTFGEYTERTAFERPLTSGVAYALKVNHSEREHFEMMHGWTIKKMETEDQTLVQDCNPENLEPAPIRDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPDATPEQRIEATVGYLGASYDIPSLVEKLLHQLASKQTIVVNVYDTTNDSAPINMYGSDFTDTGLLHISKLDFGDPLRRHEMHCRFKHKPPPPWTAINSSVGVLIITLLVGHIFDAAINRIAKVENDYLETRGLKSRAEAADVAKSQCEFLKFAGLLQFLATVSHEIRTPMNGVLGMLKLLMDTNLDPNQLDFAWTAHESGKDLISLINKVLDQAKIESGRLELESVPFDLRAIVDNVLSPFSLKSNDKGIELAVYVSDLVPEIVIGDPGRFRQIITHLVGNSLKFTDKEGHILVSVHLADEVRGPVDFMDIVLKQGSYANGDTSNNSYTTFSGLPVVDRWKSWEDFKKFSRTNVVEEPKTLRILVTVEDTGVGIPQDAQSRIFTPFMQADSSTSRTYSGTGIGLSISKRLVDLMDGEIGFVSEPRVGSTFSFTVSFQKGEISFWNTRRPQYDVDIGEFQGLKALIIDNSCIRAEVTRYHLQRLGISVDITVGTESAYQYLSNTSNTGSSTQLAMILIDRDIWEKEVGPKFDLLFKEHVDKSVTKFFLLGTPKSSNEQYELESSGHVNNVLSKPLQLDVLVSCFREAFRIEKRNQVSIKKPSTLRNLLKEKHILVVDDNAVNRRVAEGALKKYGAIVTCVKCGKDAVALLNPPHNFDACFMDLQMPEMDGYEATRQVRAVESEVNVKIASGEVSTEDNKVHWHTPIFAMTADLVQAMNEECLKCGMDGYVAKPFEEEQLYSAVAQFFETA 1275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14012294 14022428 + ClCG02G009380.1 Cla02g00917 267043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00917 1275 ProSiteProfiles Histidine kinase domain profile. 687 964 IPR005467 -
Cla02g00917 1275 Pfam CHASE domain 391 581 IPR006189 -
Cla02g00917 1275 CDD REC_hyHK_CKI1_RcsC-like 1138 1268 - -
Cla02g00917 1275 SUPERFAMILY CheY-like 1134 1272 IPR011006 -
Cla02g00917 1275 Pfam His Kinase A (phospho-acceptor) domain 682 745 IPR003661 GO:0000155|GO:0007165
Cla02g00917 1275 Gene3D - 325 377 - -
Cla02g00917 1275 Gene3D - 85 126 - -
Cla02g00917 1275 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 792 962 IPR003594 -
Cla02g00917 1275 Gene3D - 1131 1275 - -
Cla02g00917 1275 PANTHER TWO-COMPONENT HISTIDINE KINASE 287 1273 - -
Cla02g00917 1275 PANTHER TWO-COMPONENT HISTIDINE KINASE 52 123 - -
Cla02g00917 1275 ProSiteProfiles Response regulatory domain profile. 1137 1272 IPR001789 GO:0000160
Cla02g00917 1275 CDD HATPase_EvgS-ArcB-TorS-like 797 960 - -
Cla02g00917 1275 Pfam Response regulator receiver domain 1138 1221 IPR001789 GO:0000160
Cla02g00917 1275 ProSiteProfiles Response regulatory domain profile. 988 1113 IPR001789 GO:0000160
Cla02g00917 1275 SUPERFAMILY CheY-like 983 1114 IPR011006 -
Cla02g00917 1275 SMART REC_2 1136 1268 IPR001789 GO:0000160
Cla02g00917 1275 PRINTS Bacterial sensor protein C-terminal signature 889 903 IPR004358 GO:0016310|GO:0016772
Cla02g00917 1275 PRINTS Bacterial sensor protein C-terminal signature 907 917 IPR004358 GO:0016310|GO:0016772
Cla02g00917 1275 PRINTS Bacterial sensor protein C-terminal signature 948 961 IPR004358 GO:0016310|GO:0016772
Cla02g00917 1275 PRINTS Bacterial sensor protein C-terminal signature 924 942 IPR004358 GO:0016310|GO:0016772
Cla02g00917 1275 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 683 746 IPR036097 GO:0000155|GO:0007165
Cla02g00917 1275 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 734 960 IPR036890 -
Cla02g00917 1275 SMART HKATPase_4 792 964 IPR003594 -
Cla02g00917 1275 Gene3D - 744 966 IPR036890 -
Cla02g00917 1275 Gene3D - 638 743 - -
Cla02g00917 1275 PANTHER HISTIDINE KINASE 2 287 1273 - -
Cla02g00917 1275 PANTHER HISTIDINE KINASE 2 52 123 - -
Cla02g00917 1275 SMART CHASE_2 393 583 IPR006189 -
Cla02g00917 1275 ProSiteProfiles CHASE domain profile. 391 608 IPR006189 -
Cla02g00917 1275 SMART HisKA_10 680 745 IPR003661 GO:0000155|GO:0007165
Cla02g00917 1275 CDD HisKA 683 741 IPR003661 GO:0000155|GO:0007165
Cla02g00917 1275 Gene3D CHASE domain 390 615 IPR042240 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00917 Cla-Chr2:14012294 Cla06g00204 Cla-Chr6:2419644 0 dispersed
Cla05g00467 Cla-Chr5:4227158 Cla02g00917 Cla-Chr2:14012294 1.23E-08 transposed
Cla09g00510 Cla-Chr9:4816819 Cla02g00917 Cla-Chr2:14012294 1.10E-30 transposed
Cla11g00990 Cla-Chr11:18936310 Cla02g00917 Cla-Chr2:14012294 1.74E-10 transposed
Cla11g01088 Cla-Chr11:22045980 Cla02g00917 Cla-Chr2:14012294 6.26E-09 transposed
Cla02g00275 Cla-Chr2:2706911 Cla02g00917 Cla-Chr2:14012294 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60633 PF03924 CHASE 9.70E-34 CL0165 Cla TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00917 K14489 - csv:101221294 2183.3