Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00969 ATGGAGAGACAATATGGATCAAATAATTTGAGTCCATGTTCCTCCATTTCTAATCGGGTTCGACAAGAAACTGAAGATGTCACTAAAGATTTGAAGGAAGCCAATGAATTAATCGAAGCCATTGGGGCTTTTTCTGGGTTTCGAAAGACGCAATCCAAGGAGTGTTTGAATTTGGTTAGGAGATTGAAGATGCTTGTGCCTTTGTTGGAGGAGATTAGGGACCTTCATGATATGGTTCCTGCTGAGGCTTTGAGTTGTCATATTGCTCAGTTGAAAGAGGCTCTTGTATTGGCCAAAAGGTTACTGAAGAATTGCCACAATGGGAGTAAGATTTACCTGGCATTTGAGAATGAGGCTGTGATGGCAAGGTTTCATGGTGTTTATGACAAATTGAAGGAGGCCCTTGATGGGATACCTTATGATGAGCTTGGAGTCTCAGTTGAATTGAAAGAGCAAGTAGATTTCTTCACTTTTTCACTTAATGAAACTTCTGATTCATTAATCCTTGATCTTGGTGGGCTAAAAATTCGCTCTAATCCAGACCTGTTTAATGAAGAAGGTATCATAAGTCTTGTGGTTGAGCTCATGTCGACACAACTCAAAAGAGCAAAGTGTAGGAAAGATACACAAGACATGGAACTAGCAATGGACATGATGGTTGTATTTTCTAAAAATGATGAGAGAAATGCCGACCCTGTTATACTTGAAAGATTGGCAAATAAATTGGAACTACGCAAAATTGCAGATTTGGAAGCAGAAACTGTAGCTGTACAAAAATTAGTTAGACATAGAGGTGTGCCGAATTCTGAAAGTCTCCAGCAAATTATAGACCTTCTATGCAAGTTTAAACAAATTGCAGGTATGGACAATAATGTGGCTCCTGATGGTCCTGTTGCGTCGAAGTGTCTGCAACGATGTCAGTCTACAATAATCCCACATGAATTCCTCTGTCCCATTACCTTGGAAATCATGACAGATCCTGTCATTGTGGCTACTGGGCAGACTTATGACCGAGAAAGTATACAGAAATGGTTGAATTCGAACCACCGGACCTGCCCAAAAACAGGACAAACATTAGTGCATTTGTCACTAGCTCCAAATTATGCCCTCAAGAACCTCATTTTGCAGTGGTGTCAAAAGTATAACTATGAATTGCCGAAGAAGGAAGTAGTTGCTGGAATGGGAGACACGCCGCCCGATCTTGCTAAAGAAATCTCGTCTTTAGTTCACAATCTATCATCGAGCCAGTTGGATGTCCAGAGAGAGGCTATCATCAAGATCCGTGTCCTTTCCAAGGAGAACCCTGAGAATAGAGTTTGGATCGCGAATAGTGGAGTCATCCCTCCCTTGGTTAAGCTTCTCTCCTACCCAGATCTCAATTTCCAAGAACACACAGTCACCGCTCTATTGAACTTGTCTATTGACGACGCGAATAAAAGACTCATAGCAAGAGAAGGAGCCATTCCTGCTATCATAGAAATCCTGCAGCATGGAACAGAGGAGGCTAAGGAGAATTCTGCAGCTGCCCTGTTTAGCTTGTCAATGTTAGATGAAAATAAGGTTTTGATTGGATCTCTAAAGGGAATTCCGCCGCTGGTATTACTTCTTCGAGCCGGTACAATCCGAGGGAAGAAGGATGCTGCCACTGCACTCTTTAATCTGTCACTGAATCAAGCAAACAAGTCCCGAGCCATCAAAGCTGGTATCATACCGCCCCTTCTCGCTTTGCTCGAGGATAAGAACTTAGGAATGGTTGATGAAGCTTTATCAATCTTGTTACTCCTTGCATCACATCCCGAGGGACGGTCTGAGATTGGAAACAACTCTTTCATCGAAATTTTGGTTAACATCATAATAGATGGGACTCCGAAGAACAAGGAATGTGCTACATCGTTACTTCTCGAGCTGGGACGAAACAATTCGCCTTCCATCTTGGTTGCACTGCAATTTGGTGTATATGAACATTTGGTAGAGCTCACAAGATGTGGGACAAGTAGAGCCCAGAGAAAAGCAACCTCACTTTTGCAGTATATGAGCAAGTGTGAACACATTCCCTGA 2058 42.37 MERQYGSNNLSPCSSISNRVRQETEDVTKDLKEANELIEAIGAFSGFRKTQSKECLNLVRRLKMLVPLLEEIRDLHDMVPAEALSCHIAQLKEALVLAKRLLKNCHNGSKIYLAFENEAVMARFHGVYDKLKEALDGIPYDELGVSVELKEQVDFFTFSLNETSDSLILDLGGLKIRSNPDLFNEEGIISLVVELMSTQLKRAKCRKDTQDMELAMDMMVVFSKNDERNADPVILERLANKLELRKIADLEAETVAVQKLVRHRGVPNSESLQQIIDLLCKFKQIAGMDNNVAPDGPVASKCLQRCQSTIIPHEFLCPITLEIMTDPVIVATGQTYDRESIQKWLNSNHRTCPKTGQTLVHLSLAPNYALKNLILQWCQKYNYELPKKEVVAGMGDTPPDLAKEISSLVHNLSSSQLDVQREAIIKIRVLSKENPENRVWIANSGVIPPLVKLLSYPDLNFQEHTVTALLNLSIDDANKRLIAREGAIPAIIEILQHGTEEAKENSAAALFSLSMLDENKVLIGSLKGIPPLVLLLRAGTIRGKKDAATALFNLSLNQANKSRAIKAGIIPPLLALLEDKNLGMVDEALSILLLLASHPEGRSEIGNNSFIEILVNIIIDGTPKNKECATSLLLELGRNNSPSILVALQFGVYEHLVELTRCGTSRAQRKATSLLQYMSKCEHIP 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15787377 15791091 + ClCG02G009880.2 Cla02g00969 267095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00969 685 Gene3D - 30 139 IPR036537 GO:0007166
Cla02g00969 685 SMART Ubox_2 314 377 IPR003613 GO:0004842|GO:0016567
Cla02g00969 685 CDD RING-Ubox_PUB 315 357 IPR045210 -
Cla02g00969 685 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 193 682 - -
Cla02g00969 685 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 27 161 - -
Cla02g00969 685 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 486 528 IPR000225 GO:0005515
Cla02g00969 685 SUPERFAMILY ARM repeat 405 679 IPR016024 -
Cla02g00969 685 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 445 487 IPR000225 GO:0005515
Cla02g00969 685 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 527 569 IPR000225 GO:0005515
Cla02g00969 685 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 385 IPR013083 -
Cla02g00969 685 Pfam U-box domain 311 380 IPR003613 GO:0004842|GO:0016567
Cla02g00969 685 Pfam Armadillo/beta-catenin-like repeat 517 555 IPR000225 GO:0005515
Cla02g00969 685 Pfam Armadillo/beta-catenin-like repeat 434 473 IPR000225 GO:0005515
Cla02g00969 685 Pfam Armadillo/beta-catenin-like repeat 475 514 IPR000225 GO:0005515
Cla02g00969 685 Pfam Armadillo/beta-catenin-like repeat 557 593 IPR000225 GO:0005515
Cla02g00969 685 SMART arm_5 516 556 IPR000225 GO:0005515
Cla02g00969 685 SMART arm_5 598 638 IPR000225 GO:0005515
Cla02g00969 685 SMART arm_5 557 597 IPR000225 GO:0005515
Cla02g00969 685 SMART arm_5 434 474 IPR000225 GO:0005515
Cla02g00969 685 SMART arm_5 475 515 IPR000225 GO:0005515
Cla02g00969 685 SMART arm_5 640 680 IPR000225 GO:0005515
Cla02g00969 685 ProSiteProfiles U-box domain profile. 310 384 IPR003613 GO:0004842|GO:0016567
Cla02g00969 685 SUPERFAMILY RING/U-box 311 385 - -
Cla02g00969 685 MobiDBLite consensus disorder prediction 1 21 - -
Cla02g00969 685 PANTHER U BOX DOMAIN-CONTAINING 193 682 - -
Cla02g00969 685 PANTHER U BOX DOMAIN-CONTAINING 27 161 - -
Cla02g00969 685 Gene3D - 544 684 IPR011989 -
Cla02g00969 685 Gene3D - 396 543 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00969 Cla-Chr2:15787377 Cla02g01975 Cla-Chr2:34817875 1.52E-149 dispersed
Cla02g00969 Cla-Chr2:15787377 Cla03g00152 Cla-Chr3:1576062 2.01E-164 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00969 - - csv:101214151 1177.93